miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33581 3' -62.4 NC_007605.1 + 141140 0.66 0.672387
Target:  5'- aGCUCgGGGGGCggccgGGUGGCCCaccgggUCC-GCu -3'
miRNA:   3'- -CGGG-CCUCUGa----CCACCGGG------AGGaCGc -5'
33581 3' -62.4 NC_007605.1 + 17865 0.66 0.691613
Target:  5'- aCCCGGAGcCUGuuuGUGGCCCccaucucCCUGg- -3'
miRNA:   3'- cGGGCCUCuGAC---CACCGGGa------GGACgc -5'
33581 3' -62.4 NC_007605.1 + 154422 0.66 0.633638
Target:  5'- gGgCUGGAuGAC-GGUGGCCC-CCUGg- -3'
miRNA:   3'- -CgGGCCU-CUGaCCACCGGGaGGACgc -5'
33581 3' -62.4 NC_007605.1 + 150700 0.66 0.633638
Target:  5'- aCCCGGAGGCUGcGUcucgugacauGGCCaggCCUGg- -3'
miRNA:   3'- cGGGCCUCUGAC-CA----------CCGGga-GGACgc -5'
33581 3' -62.4 NC_007605.1 + 119576 0.66 0.643344
Target:  5'- uCCgCGGAaAUUGGUGccccucucuGCCCUCCUGaCGa -3'
miRNA:   3'- cGG-GCCUcUGACCAC---------CGGGAGGAC-GC- -5'
33581 3' -62.4 NC_007605.1 + 70429 0.66 0.643344
Target:  5'- uGCCCGGAGAgaGaaUGGCCCUgacaagucggCUGCa -3'
miRNA:   3'- -CGGGCCUCUgaCc-ACCGGGAg---------GACGc -5'
33581 3' -62.4 NC_007605.1 + 140732 0.66 0.672387
Target:  5'- aGCUCgGGGGGCggccgGGUGGCCCaccgggUCC-GCu -3'
miRNA:   3'- -CGGG-CCUCUGa----CCACCGGG------AGGaCGc -5'
33581 3' -62.4 NC_007605.1 + 140834 0.66 0.672387
Target:  5'- aGCUCgGGGGGCggccgGGUGGCCCaccgggUCC-GCu -3'
miRNA:   3'- -CGGG-CCUCUGa----CCACCGGG------AGGaCGc -5'
33581 3' -62.4 NC_007605.1 + 140936 0.66 0.672387
Target:  5'- aGCUCgGGGGGCggccgGGUGGCCCaccgggUCC-GCu -3'
miRNA:   3'- -CGGG-CCUCUGa----CCACCGGG------AGGaCGc -5'
33581 3' -62.4 NC_007605.1 + 142261 0.66 0.672387
Target:  5'- aGCUCgGGGGGCggccgGGUGGCCCaccgggUCC-GCu -3'
miRNA:   3'- -CGGG-CCUCUGa----CCACCGGG------AGGaCGc -5'
33581 3' -62.4 NC_007605.1 + 142159 0.66 0.672387
Target:  5'- aGCUCgGGGGGCggccgGGUGGCCCaccgggUCC-GCu -3'
miRNA:   3'- -CGGG-CCUCUGa----CCACCGGG------AGGaCGc -5'
33581 3' -62.4 NC_007605.1 + 142057 0.66 0.672387
Target:  5'- aGCUCgGGGGGCggccgGGUGGCCCaccgggUCC-GCu -3'
miRNA:   3'- -CGGG-CCUCUGa----CCACCGGG------AGGaCGc -5'
33581 3' -62.4 NC_007605.1 + 141242 0.66 0.672387
Target:  5'- aGCUCgGGGGGCggccgGGUGGCCCaccgggUCC-GCu -3'
miRNA:   3'- -CGGG-CCUCUGa----CCACCGGG------AGGaCGc -5'
33581 3' -62.4 NC_007605.1 + 141344 0.66 0.672387
Target:  5'- aGCUCgGGGGGCggccgGGUGGCCCaccgggUCC-GCu -3'
miRNA:   3'- -CGGG-CCUCUGa----CCACCGGG------AGGaCGc -5'
33581 3' -62.4 NC_007605.1 + 141446 0.66 0.672387
Target:  5'- aGCUCgGGGGGCggccgGGUGGCCCaccgggUCC-GCu -3'
miRNA:   3'- -CGGG-CCUCUGa----CCACCGGG------AGGaCGc -5'
33581 3' -62.4 NC_007605.1 + 141548 0.66 0.672387
Target:  5'- aGCUCgGGGGGCggccgGGUGGCCCaccgggUCC-GCu -3'
miRNA:   3'- -CGGG-CCUCUGa----CCACCGGG------AGGaCGc -5'
33581 3' -62.4 NC_007605.1 + 141650 0.66 0.672387
Target:  5'- aGCUCgGGGGGCggccgGGUGGCCCaccgggUCC-GCu -3'
miRNA:   3'- -CGGG-CCUCUGa----CCACCGGG------AGGaCGc -5'
33581 3' -62.4 NC_007605.1 + 141751 0.66 0.672387
Target:  5'- aGCUCgGGGGGCggccgGGUGGCCCaccgggUCC-GCu -3'
miRNA:   3'- -CGGG-CCUCUGa----CCACCGGG------AGGaCGc -5'
33581 3' -62.4 NC_007605.1 + 141853 0.66 0.672387
Target:  5'- aGCUCgGGGGGCggccgGGUGGCCCaccgggUCC-GCu -3'
miRNA:   3'- -CGGG-CCUCUGa----CCACCGGG------AGGaCGc -5'
33581 3' -62.4 NC_007605.1 + 141955 0.66 0.672387
Target:  5'- aGCUCgGGGGGCggccgGGUGGCCCaccgggUCC-GCu -3'
miRNA:   3'- -CGGG-CCUCUGa----CCACCGGG------AGGaCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.