miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33581 3' -62.4 NC_007605.1 + 126097 1.1 0.000808
Target:  5'- gGCCCGGAGACUGGUGGCCCUCCUGCGa -3'
miRNA:   3'- -CGGGCCUCUGACCACCGGGAGGACGC- -5'
33581 3' -62.4 NC_007605.1 + 54397 0.72 0.314923
Target:  5'- uGUCCGGGGACUGcagGGCCUggcgcgUCUGCGc -3'
miRNA:   3'- -CGGGCCUCUGACca-CCGGGa-----GGACGC- -5'
33581 3' -62.4 NC_007605.1 + 140632 0.72 0.335941
Target:  5'- aGCUCGGGGGCggccgGGUGGCCCaccgggUCC-GCu -3'
miRNA:   3'- -CGGGCCUCUGa----CCACCGGG------AGGaCGc -5'
33581 3' -62.4 NC_007605.1 + 20803 0.71 0.365527
Target:  5'- gGCCCGGGGGCUGGcgaGGCggCgUCC-GCGg -3'
miRNA:   3'- -CGGGCCUCUGACCa--CCG--GgAGGaCGC- -5'
33581 3' -62.4 NC_007605.1 + 110106 0.7 0.413165
Target:  5'- cGCCCGuGuGGCccgGGcGGCCUaCCUGCGg -3'
miRNA:   3'- -CGGGC-CuCUGa--CCaCCGGGaGGACGC- -5'
33581 3' -62.4 NC_007605.1 + 12116 0.7 0.418136
Target:  5'- aGCCCGGAGgugccccggccgGCUGGggcacgagagcccGGCCCgUCCgGCGc -3'
miRNA:   3'- -CGGGCCUC------------UGACCa------------CCGGG-AGGaCGC- -5'
33581 3' -62.4 NC_007605.1 + 66959 0.7 0.429875
Target:  5'- aCCCGGAGAC---UGGCCC-CCggGCGg -3'
miRNA:   3'- cGGGCCUCUGaccACCGGGaGGa-CGC- -5'
33581 3' -62.4 NC_007605.1 + 63392 0.7 0.429875
Target:  5'- uCCCGGAcuuugggcGGCUGGUGGCCgaCCgccGCu -3'
miRNA:   3'- cGGGCCU--------CUGACCACCGGgaGGa--CGc -5'
33581 3' -62.4 NC_007605.1 + 107513 0.7 0.438377
Target:  5'- --aCGGAgGugUGGcUGGCCUccuUCCUGCGg -3'
miRNA:   3'- cggGCCU-CugACC-ACCGGG---AGGACGC- -5'
33581 3' -62.4 NC_007605.1 + 33899 0.7 0.446975
Target:  5'- cGCCCGGAGuggggccggucgGCUGGgcuggccGGCCCgggUCUGgGa -3'
miRNA:   3'- -CGGGCCUC------------UGACCa------CCGGGa--GGACgC- -5'
33581 3' -62.4 NC_007605.1 + 77383 0.69 0.473315
Target:  5'- aGCCCGGAgcaauGACUcgGGUGuGUCCUUgUGUGa -3'
miRNA:   3'- -CGGGCCU-----CUGA--CCAC-CGGGAGgACGC- -5'
33581 3' -62.4 NC_007605.1 + 116834 0.69 0.482268
Target:  5'- cGCCCGauGACUGGaacacccugcUGGCCUcCCUGCu -3'
miRNA:   3'- -CGGGCcuCUGACC----------ACCGGGaGGACGc -5'
33581 3' -62.4 NC_007605.1 + 112556 0.69 0.482268
Target:  5'- cCCCGGGGGCgGGaguggaggcucGGCCCUCC-GCa -3'
miRNA:   3'- cGGGCCUCUGaCCa----------CCGGGAGGaCGc -5'
33581 3' -62.4 NC_007605.1 + 48839 0.69 0.491302
Target:  5'- cGCCCGcucGGGCUGGcGGCCCcgaaUCCggGCa -3'
miRNA:   3'- -CGGGCc--UCUGACCaCCGGG----AGGa-CGc -5'
33581 3' -62.4 NC_007605.1 + 153920 0.68 0.518854
Target:  5'- cGUCCGGGGAg-GG-GGCCagggCCUGCa -3'
miRNA:   3'- -CGGGCCUCUgaCCaCCGGga--GGACGc -5'
33581 3' -62.4 NC_007605.1 + 63560 0.68 0.537558
Target:  5'- uGCCCcaGGAGGCcuuugUGGaucuggacgcgUGGCUCUCCgGCGg -3'
miRNA:   3'- -CGGG--CCUCUG-----ACC-----------ACCGGGAGGaCGC- -5'
33581 3' -62.4 NC_007605.1 + 126444 0.68 0.543215
Target:  5'- -aCCGGAGGCUGGcgaccauucgcagGGCCCcugccUCCUGg- -3'
miRNA:   3'- cgGGCCUCUGACCa------------CCGGG-----AGGACgc -5'
33581 3' -62.4 NC_007605.1 + 160775 0.68 0.556488
Target:  5'- aGUCCGGGGAgaacGGUGGCCagacggcgCUUGCGu -3'
miRNA:   3'- -CGGGCCUCUga--CCACCGGga------GGACGC- -5'
33581 3' -62.4 NC_007605.1 + 87844 0.67 0.593903
Target:  5'- uGCCgCGGGGccucgcauACUGGcgccucuuuccgcUGGgCCUCCUGCc -3'
miRNA:   3'- -CGG-GCCUC--------UGACC-------------ACCgGGAGGACGc -5'
33581 3' -62.4 NC_007605.1 + 105730 0.67 0.594868
Target:  5'- aGCCCGGgacauaGGGCUGGaaaucUGaGCCC-CCUGgGc -3'
miRNA:   3'- -CGGGCC------UCUGACC-----AC-CGGGaGGACgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.