miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33581 3' -62.4 NC_007605.1 + 105730 0.67 0.594868
Target:  5'- aGCCCGGgacauaGGGCUGGaaaucUGaGCCC-CCUGgGc -3'
miRNA:   3'- -CGGGCC------UCUGACC-----AC-CGGGaGGACgC- -5'
33581 3' -62.4 NC_007605.1 + 98227 0.67 0.60454
Target:  5'- gGCCCGGGaGCUGGUGGagCUCgC-GCGc -3'
miRNA:   3'- -CGGGCCUcUGACCACCggGAG-GaCGC- -5'
33581 3' -62.4 NC_007605.1 + 103949 0.67 0.60454
Target:  5'- uGCCgGGAGguGCUGGgucgccUGaCCCUCUUGCa -3'
miRNA:   3'- -CGGgCCUC--UGACC------ACcGGGAGGACGc -5'
33581 3' -62.4 NC_007605.1 + 11822 0.67 0.614229
Target:  5'- uGCCCGGGaGCgucgccUGGCCCUggugcggggggCCUGCGa -3'
miRNA:   3'- -CGGGCCUcUGacc---ACCGGGA-----------GGACGC- -5'
33581 3' -62.4 NC_007605.1 + 11912 0.67 0.623931
Target:  5'- uCCCGGGGccAC-GGagcGGCUCUUCUGCGg -3'
miRNA:   3'- cGGGCCUC--UGaCCa--CCGGGAGGACGC- -5'
33581 3' -62.4 NC_007605.1 + 46802 0.67 0.623931
Target:  5'- uCCUGGAGAC-GGcacUGGCCgugUCCUGUGu -3'
miRNA:   3'- cGGGCCUCUGaCC---ACCGGg--AGGACGC- -5'
33581 3' -62.4 NC_007605.1 + 154422 0.66 0.633638
Target:  5'- gGgCUGGAuGAC-GGUGGCCC-CCUGg- -3'
miRNA:   3'- -CgGGCCU-CUGaCCACCGGGaGGACgc -5'
33581 3' -62.4 NC_007605.1 + 150700 0.66 0.633638
Target:  5'- aCCCGGAGGCUGcGUcucgugacauGGCCaggCCUGg- -3'
miRNA:   3'- cGGGCCUCUGAC-CA----------CCGGga-GGACgc -5'
33581 3' -62.4 NC_007605.1 + 86453 0.66 0.643344
Target:  5'- -gCCGGGGAacgGGUGGCaCCUCagGUGg -3'
miRNA:   3'- cgGGCCUCUga-CCACCG-GGAGgaCGC- -5'
33581 3' -62.4 NC_007605.1 + 119576 0.66 0.643344
Target:  5'- uCCgCGGAaAUUGGUGccccucucuGCCCUCCUGaCGa -3'
miRNA:   3'- cGG-GCCUcUGACCAC---------CGGGAGGAC-GC- -5'
33581 3' -62.4 NC_007605.1 + 70429 0.66 0.643344
Target:  5'- uGCCCGGAGAgaGaaUGGCCCUgacaagucggCUGCa -3'
miRNA:   3'- -CGGGCCUCUgaCc-ACCGGGAg---------GACGc -5'
33581 3' -62.4 NC_007605.1 + 156675 0.66 0.647225
Target:  5'- aGCCCGGGGACUGGgaacugaggagggcaUGaaGCCCUggCUgaUGCa -3'
miRNA:   3'- -CGGGCCUCUGACC---------------AC--CGGGA--GG--ACGc -5'
33581 3' -62.4 NC_007605.1 + 137494 0.66 0.662726
Target:  5'- uGCCUGGAGACccUGG-GGUCUgUCUGgGg -3'
miRNA:   3'- -CGGGCCUCUG--ACCaCCGGGaGGACgC- -5'
33581 3' -62.4 NC_007605.1 + 143632 0.66 0.662726
Target:  5'- uGCCUGGAGACccUGG-GGUCUgUCUGgGg -3'
miRNA:   3'- -CGGGCCUCUG--ACCaCCGGGaGGACgC- -5'
33581 3' -62.4 NC_007605.1 + 149769 0.66 0.662726
Target:  5'- uGCCUGGAGACccUGG-GGUCUgUCUGgGg -3'
miRNA:   3'- -CGGGCCUCUG--ACCaCCGGGaGGACgC- -5'
33581 3' -62.4 NC_007605.1 + 152838 0.66 0.662726
Target:  5'- uGCCUGGAGACccUGG-GGUCUgUCUGgGg -3'
miRNA:   3'- -CGGGCCUCUG--ACCaCCGGGaGGACgC- -5'
33581 3' -62.4 NC_007605.1 + 155907 0.66 0.662726
Target:  5'- uGCCUGGAGACccUGG-GGUCUgUCUGgGg -3'
miRNA:   3'- -CGGGCCUCUG--ACCaCCGGGaGGACgC- -5'
33581 3' -62.4 NC_007605.1 + 158976 0.66 0.662726
Target:  5'- uGCCUGGAGACccUGG-GGUCUgUCUGgGg -3'
miRNA:   3'- -CGGGCCUCUG--ACCaCCGGGaGGACgC- -5'
33581 3' -62.4 NC_007605.1 + 140563 0.66 0.662726
Target:  5'- uGCCUGGAGACccUGG-GGUCUgUCUGgGg -3'
miRNA:   3'- -CGGGCCUCUG--ACCaCCGGGaGGACgC- -5'
33581 3' -62.4 NC_007605.1 + 37270 0.66 0.670457
Target:  5'- aGCCCGGGGAaaagagagcugaUGGaGGCCUgggggUCUGCc -3'
miRNA:   3'- -CGGGCCUCUg-----------ACCaCCGGGa----GGACGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.