Results 21 - 40 of 88 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
33581 | 3' | -62.4 | NC_007605.1 | + | 142974 | 0.66 | 0.672387 |
Target: 5'- aGCUCgGGGGGCggccgGGUGGCCCaccgggUCC-GCu -3' miRNA: 3'- -CGGG-CCUCUGa----CCACCGGG------AGGaCGc -5' |
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33581 | 3' | -62.4 | NC_007605.1 | + | 143076 | 0.66 | 0.672387 |
Target: 5'- aGCUCgGGGGGCggccgGGUGGCCCaccgggUCC-GCu -3' miRNA: 3'- -CGGG-CCUCUGa----CCACCGGG------AGGaCGc -5' |
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33581 | 3' | -62.4 | NC_007605.1 | + | 141446 | 0.66 | 0.672387 |
Target: 5'- aGCUCgGGGGGCggccgGGUGGCCCaccgggUCC-GCu -3' miRNA: 3'- -CGGG-CCUCUGa----CCACCGGG------AGGaCGc -5' |
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33581 | 3' | -62.4 | NC_007605.1 | + | 141344 | 0.66 | 0.672387 |
Target: 5'- aGCUCgGGGGGCggccgGGUGGCCCaccgggUCC-GCu -3' miRNA: 3'- -CGGG-CCUCUGa----CCACCGGG------AGGaCGc -5' |
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33581 | 3' | -62.4 | NC_007605.1 | + | 141242 | 0.66 | 0.672387 |
Target: 5'- aGCUCgGGGGGCggccgGGUGGCCCaccgggUCC-GCu -3' miRNA: 3'- -CGGG-CCUCUGa----CCACCGGG------AGGaCGc -5' |
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33581 | 3' | -62.4 | NC_007605.1 | + | 146050 | 0.66 | 0.672387 |
Target: 5'- cGCCCGGGcuGCcGG-GGuCCCUCCgGCu -3' miRNA: 3'- -CGGGCCUc-UGaCCaCC-GGGAGGaCGc -5' |
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33581 | 3' | -62.4 | NC_007605.1 | + | 137137 | 0.66 | 0.672387 |
Target: 5'- cGCCCGGGcuGCcGG-GGuCCCUCCgGCu -3' miRNA: 3'- -CGGGCCUc-UGaCCaCC-GGGAGGaCGc -5' |
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33581 | 3' | -62.4 | NC_007605.1 | + | 149119 | 0.66 | 0.672387 |
Target: 5'- cGCCCGGGcuGCcGG-GGuCCCUCCgGCu -3' miRNA: 3'- -CGGGCCUc-UGaCCaCC-GGGAGGaCGc -5' |
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33581 | 3' | -62.4 | NC_007605.1 | + | 142981 | 0.66 | 0.672387 |
Target: 5'- cGCCCGGGcuGCcGG-GGuCCCUCCgGCu -3' miRNA: 3'- -CGGGCCUc-UGaCCaCC-GGGAGGaCGc -5' |
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33581 | 3' | -62.4 | NC_007605.1 | + | 149413 | 0.66 | 0.672387 |
Target: 5'- cGCCCGGGcuGCcGG-GGuCCCUCCgGCu -3' miRNA: 3'- -CGGGCCUc-UGaCCaCC-GGGAGGaCGc -5' |
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33581 | 3' | -62.4 | NC_007605.1 | + | 139912 | 0.66 | 0.672387 |
Target: 5'- cGCCCGGGcuGCcGG-GGuCCCUCCgGCu -3' miRNA: 3'- -CGGGCCUc-UGaCCaCC-GGGAGGaCGc -5' |
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33581 | 3' | -62.4 | NC_007605.1 | + | 140206 | 0.66 | 0.672387 |
Target: 5'- cGCCCGGGcuGCcGG-GGuCCCUCCgGCu -3' miRNA: 3'- -CGGGCCUc-UGaCCaCC-GGGAGGaCGc -5' |
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33581 | 3' | -62.4 | NC_007605.1 | + | 146344 | 0.66 | 0.672387 |
Target: 5'- cGCCCGGGcuGCcGG-GGuCCCUCCgGCu -3' miRNA: 3'- -CGGGCCUc-UGaCCaCC-GGGAGGaCGc -5' |
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33581 | 3' | -62.4 | NC_007605.1 | + | 143275 | 0.66 | 0.672387 |
Target: 5'- cGCCCGGGcuGCcGG-GGuCCCUCCgGCu -3' miRNA: 3'- -CGGGCCUc-UGaCCaCC-GGGAGGaCGc -5' |
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33581 | 3' | -62.4 | NC_007605.1 | + | 136843 | 0.66 | 0.672387 |
Target: 5'- cGCCCGGGcuGCcGG-GGuCCCUCCgGCu -3' miRNA: 3'- -CGGGCCUc-UGaCCaCC-GGGAGGaCGc -5' |
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33581 | 3' | -62.4 | NC_007605.1 | + | 140732 | 0.66 | 0.672387 |
Target: 5'- aGCUCgGGGGGCggccgGGUGGCCCaccgggUCC-GCu -3' miRNA: 3'- -CGGG-CCUCUGa----CCACCGGG------AGGaCGc -5' |
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33581 | 3' | -62.4 | NC_007605.1 | + | 140834 | 0.66 | 0.672387 |
Target: 5'- aGCUCgGGGGGCggccgGGUGGCCCaccgggUCC-GCu -3' miRNA: 3'- -CGGG-CCUCUGa----CCACCGGG------AGGaCGc -5' |
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33581 | 3' | -62.4 | NC_007605.1 | + | 140936 | 0.66 | 0.672387 |
Target: 5'- aGCUCgGGGGGCggccgGGUGGCCCaccgggUCC-GCu -3' miRNA: 3'- -CGGG-CCUCUGa----CCACCGGG------AGGaCGc -5' |
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33581 | 3' | -62.4 | NC_007605.1 | + | 141038 | 0.66 | 0.672387 |
Target: 5'- aGCUCgGGGGGCggccgGGUGGCCCaccgggUCC-GCu -3' miRNA: 3'- -CGGG-CCUCUGa----CCACCGGG------AGGaCGc -5' |
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33581 | 3' | -62.4 | NC_007605.1 | + | 141140 | 0.66 | 0.672387 |
Target: 5'- aGCUCgGGGGGCggccgGGUGGCCCaccgggUCC-GCu -3' miRNA: 3'- -CGGG-CCUCUGa----CCACCGGG------AGGaCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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