miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33581 3' -62.4 NC_007605.1 + 11325 0.66 0.682019
Target:  5'- gGgCUGGAGAgcCUGGaacgGGCCCUggaUCUGCu -3'
miRNA:   3'- -CgGGCCUCU--GACCa---CCGGGA---GGACGc -5'
33581 3' -62.4 NC_007605.1 + 11822 0.67 0.614229
Target:  5'- uGCCCGGGaGCgucgccUGGCCCUggugcggggggCCUGCGa -3'
miRNA:   3'- -CGGGCCUcUGacc---ACCGGGA-----------GGACGC- -5'
33581 3' -62.4 NC_007605.1 + 11912 0.67 0.623931
Target:  5'- uCCCGGGGccAC-GGagcGGCUCUUCUGCGg -3'
miRNA:   3'- cGGGCCUC--UGaCCa--CCGGGAGGACGC- -5'
33581 3' -62.4 NC_007605.1 + 12116 0.7 0.418136
Target:  5'- aGCCCGGAGgugccccggccgGCUGGggcacgagagcccGGCCCgUCCgGCGc -3'
miRNA:   3'- -CGGGCCUC------------UGACCa------------CCGGG-AGGaCGC- -5'
33581 3' -62.4 NC_007605.1 + 17865 0.66 0.691613
Target:  5'- aCCCGGAGcCUGuuuGUGGCCCccaucucCCUGg- -3'
miRNA:   3'- cGGGCCUCuGAC---CACCGGGa------GGACgc -5'
33581 3' -62.4 NC_007605.1 + 20803 0.71 0.365527
Target:  5'- gGCCCGGGGGCUGGcgaGGCggCgUCC-GCGg -3'
miRNA:   3'- -CGGGCCUCUGACCa--CCG--GgAGGaCGC- -5'
33581 3' -62.4 NC_007605.1 + 33899 0.7 0.446975
Target:  5'- cGCCCGGAGuggggccggucgGCUGGgcuggccGGCCCgggUCUGgGa -3'
miRNA:   3'- -CGGGCCUC------------UGACCa------CCGGGa--GGACgC- -5'
33581 3' -62.4 NC_007605.1 + 37270 0.66 0.670457
Target:  5'- aGCCCGGGGAaaagagagcugaUGGaGGCCUgggggUCUGCc -3'
miRNA:   3'- -CGGGCCUCUg-----------ACCaCCGGGa----GGACGc -5'
33581 3' -62.4 NC_007605.1 + 39967 0.66 0.682019
Target:  5'- cGgCUGGGGGCUGG-GGucccgggacgccCCCUcCCUGCu -3'
miRNA:   3'- -CgGGCCUCUGACCaCC------------GGGA-GGACGc -5'
33581 3' -62.4 NC_007605.1 + 46802 0.67 0.623931
Target:  5'- uCCUGGAGAC-GGcacUGGCCgugUCCUGUGu -3'
miRNA:   3'- cGGGCCUCUGaCC---ACCGGg--AGGACGC- -5'
33581 3' -62.4 NC_007605.1 + 48839 0.69 0.491302
Target:  5'- cGCCCGcucGGGCUGGcGGCCCcgaaUCCggGCa -3'
miRNA:   3'- -CGGGCc--UCUGACCaCCGGG----AGGa-CGc -5'
33581 3' -62.4 NC_007605.1 + 50668 0.66 0.672387
Target:  5'- aGCCCgacggccguggGGAGGCgGGUGGCggagggccgaaUCUCC-GCGg -3'
miRNA:   3'- -CGGG-----------CCUCUGaCCACCG-----------GGAGGaCGC- -5'
33581 3' -62.4 NC_007605.1 + 54397 0.72 0.314923
Target:  5'- uGUCCGGGGACUGcagGGCCUggcgcgUCUGCGc -3'
miRNA:   3'- -CGGGCCUCUGACca-CCGGGa-----GGACGC- -5'
33581 3' -62.4 NC_007605.1 + 63392 0.7 0.429875
Target:  5'- uCCCGGAcuuugggcGGCUGGUGGCCgaCCgccGCu -3'
miRNA:   3'- cGGGCCU--------CUGACCACCGGgaGGa--CGc -5'
33581 3' -62.4 NC_007605.1 + 63560 0.68 0.537558
Target:  5'- uGCCCcaGGAGGCcuuugUGGaucuggacgcgUGGCUCUCCgGCGg -3'
miRNA:   3'- -CGGG--CCUCUG-----ACC-----------ACCGGGAGGaCGC- -5'
33581 3' -62.4 NC_007605.1 + 66959 0.7 0.429875
Target:  5'- aCCCGGAGAC---UGGCCC-CCggGCGg -3'
miRNA:   3'- cGGGCCUCUGaccACCGGGaGGa-CGC- -5'
33581 3' -62.4 NC_007605.1 + 70429 0.66 0.643344
Target:  5'- uGCCCGGAGAgaGaaUGGCCCUgacaagucggCUGCa -3'
miRNA:   3'- -CGGGCCUCUgaCc-ACCGGGAg---------GACGc -5'
33581 3' -62.4 NC_007605.1 + 77383 0.69 0.473315
Target:  5'- aGCCCGGAgcaauGACUcgGGUGuGUCCUUgUGUGa -3'
miRNA:   3'- -CGGGCCU-----CUGA--CCAC-CGGGAGgACGC- -5'
33581 3' -62.4 NC_007605.1 + 86453 0.66 0.643344
Target:  5'- -gCCGGGGAacgGGUGGCaCCUCagGUGg -3'
miRNA:   3'- cgGGCCUCUga-CCACCG-GGAGgaCGC- -5'
33581 3' -62.4 NC_007605.1 + 87844 0.67 0.593903
Target:  5'- uGCCgCGGGGccucgcauACUGGcgccucuuuccgcUGGgCCUCCUGCc -3'
miRNA:   3'- -CGG-GCCUC--------UGACC-------------ACCgGGAGGACGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.