miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33581 3' -62.4 NC_007605.1 + 141038 0.66 0.672387
Target:  5'- aGCUCgGGGGGCggccgGGUGGCCCaccgggUCC-GCu -3'
miRNA:   3'- -CGGG-CCUCUGa----CCACCGGG------AGGaCGc -5'
33581 3' -62.4 NC_007605.1 + 103949 0.67 0.60454
Target:  5'- uGCCgGGAGguGCUGGgucgccUGaCCCUCUUGCa -3'
miRNA:   3'- -CGGgCCUC--UGACC------ACcGGGAGGACGc -5'
33581 3' -62.4 NC_007605.1 + 154422 0.66 0.633638
Target:  5'- gGgCUGGAuGAC-GGUGGCCC-CCUGg- -3'
miRNA:   3'- -CgGGCCU-CUGaCCACCGGGaGGACgc -5'
33581 3' -62.4 NC_007605.1 + 150700 0.66 0.633638
Target:  5'- aCCCGGAGGCUGcGUcucgugacauGGCCaggCCUGg- -3'
miRNA:   3'- cGGGCCUCUGAC-CA----------CCGGga-GGACgc -5'
33581 3' -62.4 NC_007605.1 + 119576 0.66 0.643344
Target:  5'- uCCgCGGAaAUUGGUGccccucucuGCCCUCCUGaCGa -3'
miRNA:   3'- cGG-GCCUcUGACCAC---------CGGGAGGAC-GC- -5'
33581 3' -62.4 NC_007605.1 + 70429 0.66 0.643344
Target:  5'- uGCCCGGAGAgaGaaUGGCCCUgacaagucggCUGCa -3'
miRNA:   3'- -CGGGCCUCUgaCc-ACCGGGAg---------GACGc -5'
33581 3' -62.4 NC_007605.1 + 140732 0.66 0.672387
Target:  5'- aGCUCgGGGGGCggccgGGUGGCCCaccgggUCC-GCu -3'
miRNA:   3'- -CGGG-CCUCUGa----CCACCGGG------AGGaCGc -5'
33581 3' -62.4 NC_007605.1 + 140834 0.66 0.672387
Target:  5'- aGCUCgGGGGGCggccgGGUGGCCCaccgggUCC-GCu -3'
miRNA:   3'- -CGGG-CCUCUGa----CCACCGGG------AGGaCGc -5'
33581 3' -62.4 NC_007605.1 + 140936 0.66 0.672387
Target:  5'- aGCUCgGGGGGCggccgGGUGGCCCaccgggUCC-GCu -3'
miRNA:   3'- -CGGG-CCUCUGa----CCACCGGG------AGGaCGc -5'
33581 3' -62.4 NC_007605.1 + 105730 0.67 0.594868
Target:  5'- aGCCCGGgacauaGGGCUGGaaaucUGaGCCC-CCUGgGc -3'
miRNA:   3'- -CGGGCC------UCUGACC-----AC-CGGGaGGACgC- -5'
33581 3' -62.4 NC_007605.1 + 87844 0.67 0.593903
Target:  5'- uGCCgCGGGGccucgcauACUGGcgccucuuuccgcUGGgCCUCCUGCc -3'
miRNA:   3'- -CGG-GCCUC--------UGACC-------------ACCgGGAGGACGc -5'
33581 3' -62.4 NC_007605.1 + 160775 0.68 0.556488
Target:  5'- aGUCCGGGGAgaacGGUGGCCagacggcgCUUGCGu -3'
miRNA:   3'- -CGGGCCUCUga--CCACCGGga------GGACGC- -5'
33581 3' -62.4 NC_007605.1 + 54397 0.72 0.314923
Target:  5'- uGUCCGGGGACUGcagGGCCUggcgcgUCUGCGc -3'
miRNA:   3'- -CGGGCCUCUGACca-CCGGGa-----GGACGC- -5'
33581 3' -62.4 NC_007605.1 + 140632 0.72 0.335941
Target:  5'- aGCUCGGGGGCggccgGGUGGCCCaccgggUCC-GCu -3'
miRNA:   3'- -CGGGCCUCUGa----CCACCGGG------AGGaCGc -5'
33581 3' -62.4 NC_007605.1 + 63392 0.7 0.429875
Target:  5'- uCCCGGAcuuugggcGGCUGGUGGCCgaCCgccGCu -3'
miRNA:   3'- cGGGCCU--------CUGACCACCGGgaGGa--CGc -5'
33581 3' -62.4 NC_007605.1 + 107513 0.7 0.438377
Target:  5'- --aCGGAgGugUGGcUGGCCUccuUCCUGCGg -3'
miRNA:   3'- cggGCCU-CugACC-ACCGGG---AGGACGC- -5'
33581 3' -62.4 NC_007605.1 + 33899 0.7 0.446975
Target:  5'- cGCCCGGAGuggggccggucgGCUGGgcuggccGGCCCgggUCUGgGa -3'
miRNA:   3'- -CGGGCCUC------------UGACCa------CCGGGa--GGACgC- -5'
33581 3' -62.4 NC_007605.1 + 48839 0.69 0.491302
Target:  5'- cGCCCGcucGGGCUGGcGGCCCcgaaUCCggGCa -3'
miRNA:   3'- -CGGGCc--UCUGACCaCCGGG----AGGa-CGc -5'
33581 3' -62.4 NC_007605.1 + 153920 0.68 0.518854
Target:  5'- cGUCCGGGGAg-GG-GGCCagggCCUGCa -3'
miRNA:   3'- -CGGGCCUCUgaCCaCCGGga--GGACGc -5'
33581 3' -62.4 NC_007605.1 + 63560 0.68 0.537558
Target:  5'- uGCCCcaGGAGGCcuuugUGGaucuggacgcgUGGCUCUCCgGCGg -3'
miRNA:   3'- -CGGG--CCUCUG-----ACC-----------ACCGGGAGGaCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.