miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33586 5' -61.6 NC_007605.1 + 29595 0.66 0.695206
Target:  5'- cUCCAGggCCGGaaccccggaCCCGGCugcAGCCg- -3'
miRNA:   3'- cAGGUCaaGGCCga-------GGGCCG---UCGGag -5'
33586 5' -61.6 NC_007605.1 + 29187 0.66 0.695206
Target:  5'- cUCCAGggCCGGaaccccggaCCCGGCugcAGCCg- -3'
miRNA:   3'- cAGGUCaaGGCCga-------GGGCCG---UCGGag -5'
33586 5' -61.6 NC_007605.1 + 29085 0.66 0.695206
Target:  5'- cUCCAGggCCGGaaccccggaCCCGGCugcAGCCg- -3'
miRNA:   3'- cAGGUCaaGGCCga-------GGGCCG---UCGGag -5'
33586 5' -61.6 NC_007605.1 + 30104 0.66 0.695206
Target:  5'- cUCCAGggCCGGaaccccggaCCCGGCugcAGCCg- -3'
miRNA:   3'- cAGGUCaaGGCCga-------GGGCCG---UCGGag -5'
33586 5' -61.6 NC_007605.1 + 30002 0.66 0.695206
Target:  5'- cUCCAGggCCGGaaccccggaCCCGGCugcAGCCg- -3'
miRNA:   3'- cAGGUCaaGGCCga-------GGGCCG---UCGGag -5'
33586 5' -61.6 NC_007605.1 + 29901 0.66 0.695206
Target:  5'- cUCCAGggCCGGaaccccggaCCCGGCugcAGCCg- -3'
miRNA:   3'- cAGGUCaaGGCCga-------GGGCCG---UCGGag -5'
33586 5' -61.6 NC_007605.1 + 30206 0.66 0.695206
Target:  5'- cUCCAGggCCGGaaccccggaCCCGGCugcAGCCg- -3'
miRNA:   3'- cAGGUCaaGGCCga-------GGGCCG---UCGGag -5'
33586 5' -61.6 NC_007605.1 + 29493 0.66 0.695206
Target:  5'- cUCCAGggCCGGaaccccggaCCCGGCugcAGCCg- -3'
miRNA:   3'- cAGGUCaaGGCCga-------GGGCCG---UCGGag -5'
33586 5' -61.6 NC_007605.1 + 28576 0.66 0.695206
Target:  5'- cUCCAGggCCGGaaccccggaCCCGGCugcAGCCg- -3'
miRNA:   3'- cAGGUCaaGGCCga-------GGGCCG---UCGGag -5'
33586 5' -61.6 NC_007605.1 + 28983 0.66 0.695206
Target:  5'- cUCCAGggCCGGaaccccggaCCCGGCugcAGCCg- -3'
miRNA:   3'- cAGGUCaaGGCCga-------GGGCCG---UCGGag -5'
33586 5' -61.6 NC_007605.1 + 28780 0.66 0.695206
Target:  5'- cUCCAGggCCGGaaccccggaCCCGGCugcAGCCg- -3'
miRNA:   3'- cAGGUCaaGGCCga-------GGGCCG---UCGGag -5'
33586 5' -61.6 NC_007605.1 + 30308 0.66 0.695206
Target:  5'- cUCCAGggCCGGaaccccggaCCCGGCugcAGCCg- -3'
miRNA:   3'- cAGGUCaaGGCCga-------GGGCCG---UCGGag -5'
33586 5' -61.6 NC_007605.1 + 29391 0.66 0.695206
Target:  5'- cUCCAGggCCGGaaccccggaCCCGGCugcAGCCg- -3'
miRNA:   3'- cAGGUCaaGGCCga-------GGGCCG---UCGGag -5'
33586 5' -61.6 NC_007605.1 + 28678 0.66 0.695206
Target:  5'- cUCCAGggCCGGaaccccggaCCCGGCugcAGCCg- -3'
miRNA:   3'- cAGGUCaaGGCCga-------GGGCCG---UCGGag -5'
33586 5' -61.6 NC_007605.1 + 29289 0.66 0.695206
Target:  5'- cUCCAGggCCGGaaccccggaCCCGGCugcAGCCg- -3'
miRNA:   3'- cAGGUCaaGGCCga-------GGGCCG---UCGGag -5'
33586 5' -61.6 NC_007605.1 + 28882 0.66 0.695206
Target:  5'- cUCCAGggCCGGaaccccggaCCCGGCugcAGCCg- -3'
miRNA:   3'- cAGGUCaaGGCCga-------GGGCCG---UCGGag -5'
33586 5' -61.6 NC_007605.1 + 10692 0.66 0.695206
Target:  5'- cGUCCGGgagCCgGGCggCUCGGCuaaggagggcGGCCUUg -3'
miRNA:   3'- -CAGGUCaa-GG-CCGa-GGGCCG----------UCGGAG- -5'
33586 5' -61.6 NC_007605.1 + 30818 0.66 0.695206
Target:  5'- cUCCAGggCCGGaaccccggaCCCGGCugcAGCCg- -3'
miRNA:   3'- cAGGUCaaGGCCga-------GGGCCG---UCGGag -5'
33586 5' -61.6 NC_007605.1 + 29697 0.66 0.695206
Target:  5'- cUCCAGggCCGGaaccccggaCCCGGCugcAGCCg- -3'
miRNA:   3'- cAGGUCaaGGCCga-------GGGCCG---UCGGag -5'
33586 5' -61.6 NC_007605.1 + 30410 0.66 0.695206
Target:  5'- cUCCAGggCCGGaaccccggaCCCGGCugcAGCCg- -3'
miRNA:   3'- cAGGUCaaGGCCga-------GGGCCG---UCGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.