miRNA display CGI


Results 1 - 20 of 204 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33587 3' -59.7 NC_007605.1 + 72178 0.65 0.804383
Target:  5'- uGCCCcGGGcaugGCACAccugaacuaaguuuGGCCCgGuuuGCUCAa -3'
miRNA:   3'- -CGGGuCCC----UGUGU--------------CCGGGgCu--UGAGU- -5'
33587 3' -59.7 NC_007605.1 + 113058 0.66 0.798329
Target:  5'- -gCCAGaaGGAUGC-GGCCCCGGGCa-- -3'
miRNA:   3'- cgGGUC--CCUGUGuCCGGGGCUUGagu -5'
33587 3' -59.7 NC_007605.1 + 97885 0.66 0.798329
Target:  5'- cGCCUacaGGGGGCGCcuuccccuGGCCUCGGccgauCUCGu -3'
miRNA:   3'- -CGGG---UCCCUGUGu-------CCGGGGCUu----GAGU- -5'
33587 3' -59.7 NC_007605.1 + 153750 0.66 0.798329
Target:  5'- gGCCUccagggagauGGGGGCcacaaACAGGCUCCGggUg-- -3'
miRNA:   3'- -CGGG----------UCCCUG-----UGUCCGGGGCuuGagu -5'
33587 3' -59.7 NC_007605.1 + 108569 0.66 0.798329
Target:  5'- cCCCGGGGccagcagcccuGCGCGccagacGGCCgCCGcACUCAg -3'
miRNA:   3'- cGGGUCCC-----------UGUGU------CCGG-GGCuUGAGU- -5'
33587 3' -59.7 NC_007605.1 + 28537 0.66 0.795713
Target:  5'- aCCCAGcGGACccGguGGgccacccggccgccCCCCGAGCUCc -3'
miRNA:   3'- cGGGUC-CCUG--UguCC--------------GGGGCUUGAGu -5'
33587 3' -59.7 NC_007605.1 + 30065 0.66 0.795713
Target:  5'- aCCCAGcGGACccGguGGgccacccggccgccCCCCGAGCUCc -3'
miRNA:   3'- cGGGUC-CCUG--UguCC--------------GGGGCUUGAGu -5'
33587 3' -59.7 NC_007605.1 + 29352 0.66 0.795713
Target:  5'- aCCCAGcGGACccGguGGgccacccggccgccCCCCGAGCUCc -3'
miRNA:   3'- cGGGUC-CCUG--UguCC--------------GGGGCUUGAGu -5'
33587 3' -59.7 NC_007605.1 + 28741 0.66 0.795713
Target:  5'- aCCCAGcGGACccGguGGgccacccggccgccCCCCGAGCUCc -3'
miRNA:   3'- cGGGUC-CCUG--UguCC--------------GGGGCUUGAGu -5'
33587 3' -59.7 NC_007605.1 + 29148 0.66 0.795713
Target:  5'- aCCCAGcGGACccGguGGgccacccggccgccCCCCGAGCUCc -3'
miRNA:   3'- cGGGUC-CCUG--UguCC--------------GGGGCUUGAGu -5'
33587 3' -59.7 NC_007605.1 + 29250 0.66 0.795713
Target:  5'- aCCCAGcGGACccGguGGgccacccggccgccCCCCGAGCUCc -3'
miRNA:   3'- cGGGUC-CCUG--UguCC--------------GGGGCUUGAGu -5'
33587 3' -59.7 NC_007605.1 + 29556 0.66 0.795713
Target:  5'- aCCCAGcGGACccGguGGgccacccggccgccCCCCGAGCUCc -3'
miRNA:   3'- cGGGUC-CCUG--UguCC--------------GGGGCUUGAGu -5'
33587 3' -59.7 NC_007605.1 + 30269 0.66 0.795713
Target:  5'- aCCCAGcGGACccGguGGgccacccggccgccCCCCGAGCUCc -3'
miRNA:   3'- cGGGUC-CCUG--UguCC--------------GGGGCUUGAGu -5'
33587 3' -59.7 NC_007605.1 + 28639 0.66 0.795713
Target:  5'- aCCCAGcGGACccGguGGgccacccggccgccCCCCGAGCUCc -3'
miRNA:   3'- cGGGUC-CCUG--UguCC--------------GGGGCUUGAGu -5'
33587 3' -59.7 NC_007605.1 + 29760 0.66 0.795713
Target:  5'- aCCCAGcGGACccGguGGgccacccggccgccCCCCGAGCUCc -3'
miRNA:   3'- cGGGUC-CCUG--UguCC--------------GGGGCUUGAGu -5'
33587 3' -59.7 NC_007605.1 + 29963 0.66 0.795713
Target:  5'- aCCCAGcGGACccGguGGgccacccggccgccCCCCGAGCUCc -3'
miRNA:   3'- cGGGUC-CCUG--UguCC--------------GGGGCUUGAGu -5'
33587 3' -59.7 NC_007605.1 + 29658 0.66 0.795713
Target:  5'- aCCCAGcGGACccGguGGgccacccggccgccCCCCGAGCUCc -3'
miRNA:   3'- cGGGUC-CCUG--UguCC--------------GGGGCUUGAGu -5'
33587 3' -59.7 NC_007605.1 + 30167 0.66 0.795713
Target:  5'- aCCCAGcGGACccGguGGgccacccggccgccCCCCGAGCUCc -3'
miRNA:   3'- cGGGUC-CCUG--UguCC--------------GGGGCUUGAGu -5'
33587 3' -59.7 NC_007605.1 + 29862 0.66 0.795713
Target:  5'- aCCCAGcGGACccGguGGgccacccggccgccCCCCGAGCUCc -3'
miRNA:   3'- cGGGUC-CCUG--UguCC--------------GGGGCUUGAGu -5'
33587 3' -59.7 NC_007605.1 + 29454 0.66 0.795713
Target:  5'- aCCCAGcGGACccGguGGgccacccggccgccCCCCGAGCUCc -3'
miRNA:   3'- cGGGUC-CCUG--UguCC--------------GGGGCUUGAGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.