miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33587 5' -57 NC_007605.1 + 66084 0.65 0.896801
Target:  5'- -aCGCGGCUCGCUGCuccuacaacaaaucUGgCCCCCg -3'
miRNA:   3'- aaGCGUUGAGUGACGcgc-----------ACaGGGGG- -5'
33587 5' -57 NC_007605.1 + 164488 0.66 0.888205
Target:  5'- -gCGCAGgaCGCUgaugaugagccguacGUGCGUGUcuuugCCCCCg -3'
miRNA:   3'- aaGCGUUgaGUGA---------------CGCGCACA-----GGGGG- -5'
33587 5' -57 NC_007605.1 + 165952 0.66 0.885485
Target:  5'- -aUGguGC-CAauggGCGCGgGUCCCCCu -3'
miRNA:   3'- aaGCguUGaGUga--CGCGCaCAGGGGG- -5'
33587 5' -57 NC_007605.1 + 1438 0.66 0.878529
Target:  5'- -aCGCAugGCUgCGCccGCGCGgcgCCCCCc -3'
miRNA:   3'- aaGCGU--UGA-GUGa-CGCGCacaGGGGG- -5'
33587 5' -57 NC_007605.1 + 378 0.66 0.878529
Target:  5'- -aCGCAugGCUgCGCccGCGCGgcgCCCCCc -3'
miRNA:   3'- aaGCGU--UGA-GUGa-CGCGCacaGGGGG- -5'
33587 5' -57 NC_007605.1 + 916 0.66 0.878529
Target:  5'- -aCGCAugGCUgCGCccGCGCGgcgCCCCCc -3'
miRNA:   3'- aaGCGU--UGA-GUGa-CGCGCacaGGGGG- -5'
33587 5' -57 NC_007605.1 + 162588 0.66 0.871358
Target:  5'- gUCGUccGGC-CGCUGCcCGUcGUCCUCCu -3'
miRNA:   3'- aAGCG--UUGaGUGACGcGCA-CAGGGGG- -5'
33587 5' -57 NC_007605.1 + 68028 0.67 0.838191
Target:  5'- -gCGCAgGCUUACUuuuugcauggucagGCucCGUGUCCCCCc -3'
miRNA:   3'- aaGCGU-UGAGUGA--------------CGc-GCACAGGGGG- -5'
33587 5' -57 NC_007605.1 + 159250 0.67 0.82411
Target:  5'- --gGCAccCUCGCcgGCGCGccUGUCCuCCCa -3'
miRNA:   3'- aagCGUu-GAGUGa-CGCGC--ACAGG-GGG- -5'
33587 5' -57 NC_007605.1 + 1976 0.67 0.82411
Target:  5'- -aCGCAugGCUgCGCccGCGCGcGcCCCCCg -3'
miRNA:   3'- aaGCGU--UGA-GUGa-CGCGCaCaGGGGG- -5'
33587 5' -57 NC_007605.1 + 8288 0.68 0.798076
Target:  5'- --gGCGGCguguggggGCUGaCGCGUG-CCCCCa -3'
miRNA:   3'- aagCGUUGag------UGAC-GCGCACaGGGGG- -5'
33587 5' -57 NC_007605.1 + 122172 0.68 0.779969
Target:  5'- gUgGCAGC-CACU-CGCGgGUCCCCg -3'
miRNA:   3'- aAgCGUUGaGUGAcGCGCaCAGGGGg -5'
33587 5' -57 NC_007605.1 + 103605 0.68 0.761341
Target:  5'- -aUGCAAaaaguaagC-CUGCGCGUGaCCCCCc -3'
miRNA:   3'- aaGCGUUga------GuGACGCGCACaGGGGG- -5'
33587 5' -57 NC_007605.1 + 121303 0.69 0.742263
Target:  5'- -cUGCAuCUcCGCcGCGCGUGUCUCUCc -3'
miRNA:   3'- aaGCGUuGA-GUGaCGCGCACAGGGGG- -5'
33587 5' -57 NC_007605.1 + 61977 0.7 0.693068
Target:  5'- -cCGCGACgggggGCGUuUGUCCCCCg -3'
miRNA:   3'- aaGCGUUGagugaCGCGcACAGGGGG- -5'
33587 5' -57 NC_007605.1 + 133537 0.7 0.652758
Target:  5'- -aUGCAGCg----GCGCGUGUUCCCUa -3'
miRNA:   3'- aaGCGUUGagugaCGCGCACAGGGGG- -5'
33587 5' -57 NC_007605.1 + 108604 0.75 0.394821
Target:  5'- -cCGC-ACUCAgcgaggaggcCUGCGCGUGUUCCUCa -3'
miRNA:   3'- aaGCGuUGAGU----------GACGCGCACAGGGGG- -5'
33587 5' -57 NC_007605.1 + 133075 1.1 0.002189
Target:  5'- cUUCGCAACUCACUGCGCGUGUCCCCCg -3'
miRNA:   3'- -AAGCGUUGAGUGACGCGCACAGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.