miRNA display CGI


Results 1 - 20 of 178 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33589 3' -63.7 NC_007605.1 + 149064 0.66 0.598974
Target:  5'- aAGGCCuggGCCAUGCUCuggccGGUCACGa-- -3'
miRNA:   3'- -UCCGG---CGGUACGAGuc---CCGGUGCcgc -5'
33589 3' -63.7 NC_007605.1 + 109461 0.66 0.598974
Target:  5'- cGGCCGCgGacaUCAaGGCCAUGGCc -3'
miRNA:   3'- uCCGGCGgUacgAGUcCCGGUGCCGc -5'
33589 3' -63.7 NC_007605.1 + 12059 0.66 0.598006
Target:  5'- cGGCUcaaccgaGCCAUGCagCGguuGGGCCGaGGCGa -3'
miRNA:   3'- uCCGG-------CGGUACGa-GU---CCCGGUgCCGC- -5'
33589 3' -63.7 NC_007605.1 + 131353 0.66 0.597037
Target:  5'- cGGCCGCgguccuccccCGUGaacggggcgcgCuGGGCCGCGGCu -3'
miRNA:   3'- uCCGGCG----------GUACga---------GuCCCGGUGCCGc -5'
33589 3' -63.7 NC_007605.1 + 76100 0.66 0.596069
Target:  5'- cAGGCCuCCAUGgUgaugaucuaacagaCAGGGaCgGCGGCGc -3'
miRNA:   3'- -UCCGGcGGUACgA--------------GUCCC-GgUGCCGC- -5'
33589 3' -63.7 NC_007605.1 + 150767 0.66 0.596069
Target:  5'- gAGGCCGCgccagagcagagccCGggacUGaCUCAGGGCCAcauccccuCGGCc -3'
miRNA:   3'- -UCCGGCG--------------GU----AC-GAGUCCCGGU--------GCCGc -5'
33589 3' -63.7 NC_007605.1 + 47063 0.66 0.589297
Target:  5'- cAGGCCGCCAacgcccagaagGcCUCGcGGGUCAUGGa- -3'
miRNA:   3'- -UCCGGCGGUa----------C-GAGU-CCCGGUGCCgc -5'
33589 3' -63.7 NC_007605.1 + 73460 0.66 0.589297
Target:  5'- cGGGCCcagGCCAUGCacauguccuccUCuGGGUagACGGUGg -3'
miRNA:   3'- -UCCGG---CGGUACG-----------AGuCCCGg-UGCCGC- -5'
33589 3' -63.7 NC_007605.1 + 110140 0.66 0.589297
Target:  5'- gAGGCCgagGCCGUGgaCAGacgaGCC-CGGCGc -3'
miRNA:   3'- -UCCGG---CGGUACgaGUCc---CGGuGCCGC- -5'
33589 3' -63.7 NC_007605.1 + 98314 0.66 0.589297
Target:  5'- cGGCCagGCCAccUGC-CGGGGCCAgUGGa- -3'
miRNA:   3'- uCCGG--CGGU--ACGaGUCCCGGU-GCCgc -5'
33589 3' -63.7 NC_007605.1 + 35211 0.66 0.579648
Target:  5'- gGGGCCGCguaggGUagCGGGGUCugccuCGGCGg -3'
miRNA:   3'- -UCCGGCGgua--CGa-GUCCCGGu----GCCGC- -5'
33589 3' -63.7 NC_007605.1 + 122525 0.66 0.579648
Target:  5'- uGGCCcguuguagGCCAgGgUCuGGGCCACGuGCu -3'
miRNA:   3'- uCCGG--------CGGUaCgAGuCCCGGUGC-CGc -5'
33589 3' -63.7 NC_007605.1 + 56157 0.66 0.570033
Target:  5'- cGGGUauagaGCaUAUGC-CGGuGGCCGCGGCc -3'
miRNA:   3'- -UCCGg----CG-GUACGaGUC-CCGGUGCCGc -5'
33589 3' -63.7 NC_007605.1 + 113713 0.66 0.570033
Target:  5'- uGGGUacguaGUCGuUGUUCAGGGCCgugcAUGGCa -3'
miRNA:   3'- -UCCGg----CGGU-ACGAGUCCCGG----UGCCGc -5'
33589 3' -63.7 NC_007605.1 + 66243 0.66 0.570033
Target:  5'- aAGGCCGCCGauCUgGGGGUgAUGGa- -3'
miRNA:   3'- -UCCGGCGGUacGAgUCCCGgUGCCgc -5'
33589 3' -63.7 NC_007605.1 + 128042 0.66 0.570033
Target:  5'- uGGCUGUCAUGCUauuGGGUUAacgGGUGg -3'
miRNA:   3'- uCCGGCGGUACGAgu-CCCGGUg--CCGC- -5'
33589 3' -63.7 NC_007605.1 + 3990 0.66 0.560457
Target:  5'- cGGCauaGUCAUGaUUCc-GGCCAUGGCGg -3'
miRNA:   3'- uCCGg--CGGUAC-GAGucCCGGUGCCGC- -5'
33589 3' -63.7 NC_007605.1 + 157073 0.66 0.560457
Target:  5'- aGGGaCCcUCAUGCUCuugcgcAGGGUgACGGUGg -3'
miRNA:   3'- -UCC-GGcGGUACGAG------UCCCGgUGCCGC- -5'
33589 3' -63.7 NC_007605.1 + 162043 0.66 0.560457
Target:  5'- cGGCCGuacaCCcgGCccugCAGGGCCGCguccaggucuGGCa -3'
miRNA:   3'- uCCGGC----GGuaCGa---GUCCCGGUG----------CCGc -5'
33589 3' -63.7 NC_007605.1 + 132471 0.66 0.559502
Target:  5'- cGGCCGCCcgGCUgcccccggagcgcCAGGaaccccggcuGCCccaggaccugGCGGCGg -3'
miRNA:   3'- uCCGGCGGuaCGA-------------GUCC----------CGG----------UGCCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.