miRNA display CGI


Results 21 - 40 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33589 3' -63.7 NC_007605.1 + 132221 0.66 0.559502
Target:  5'- cGGCCGCCcgGCUgcccccggagcgcCAGGaaccccggcuGCCccaggaccugGCGGCGg -3'
miRNA:   3'- uCCGGCGGuaCGA-------------GUCC----------CGG----------UGCCGC- -5'
33589 3' -63.7 NC_007605.1 + 56157 0.66 0.570033
Target:  5'- cGGGUauagaGCaUAUGC-CGGuGGCCGCGGCc -3'
miRNA:   3'- -UCCGg----CG-GUACGaGUC-CCGGUGCCGc -5'
33589 3' -63.7 NC_007605.1 + 166749 0.66 0.550926
Target:  5'- aAGGCCGCCAggagGCUUucauGGCCccUGGUGc -3'
miRNA:   3'- -UCCGGCGGUa---CGAGuc--CCGGu-GCCGC- -5'
33589 3' -63.7 NC_007605.1 + 121255 0.66 0.550926
Target:  5'- cGGCCGgcgcCCGUcCUCGGGGgcagcccaCCGCGGCc -3'
miRNA:   3'- uCCGGC----GGUAcGAGUCCC--------GGUGCCGc -5'
33589 3' -63.7 NC_007605.1 + 12059 0.66 0.598006
Target:  5'- cGGCUcaaccgaGCCAUGCagCGguuGGGCCGaGGCGa -3'
miRNA:   3'- uCCGG-------CGGUACGa-GU---CCCGGUgCCGC- -5'
33589 3' -63.7 NC_007605.1 + 98314 0.66 0.589297
Target:  5'- cGGCCagGCCAccUGC-CGGGGCCAgUGGa- -3'
miRNA:   3'- uCCGG--CGGU--ACGaGUCCCGGU-GCCgc -5'
33589 3' -63.7 NC_007605.1 + 132346 0.66 0.559502
Target:  5'- cGGCCGCCcgGCUgcccccggagcgcCAGGaaccccggcuGCCccaggaccugGCGGCGg -3'
miRNA:   3'- uCCGGCGGuaCGA-------------GUCC----------CGG----------UGCCGC- -5'
33589 3' -63.7 NC_007605.1 + 133095 0.66 0.559502
Target:  5'- cGGCCGCCcgGCUgcccccggagcgcCAGGaaccccggcuGCCccaggaccugGCGGCGg -3'
miRNA:   3'- uCCGGCGGuaCGA-------------GUCC----------CGG----------UGCCGC- -5'
33589 3' -63.7 NC_007605.1 + 132596 0.66 0.559502
Target:  5'- cGGCCGCCcgGCUgcccccggagcgcCAGGaaccccggcuGCCccaggaccugGCGGCGg -3'
miRNA:   3'- uCCGGCGGuaCGA-------------GUCC----------CGG----------UGCCGC- -5'
33589 3' -63.7 NC_007605.1 + 113713 0.66 0.570033
Target:  5'- uGGGUacguaGUCGuUGUUCAGGGCCgugcAUGGCa -3'
miRNA:   3'- -UCCGg----CGGU-ACGAGUCCCGG----UGCCGc -5'
33589 3' -63.7 NC_007605.1 + 154664 0.66 0.550926
Target:  5'- cGaGCCGCC-UGCgccccUCGGGGCC-CGuGCa -3'
miRNA:   3'- uC-CGGCGGuACG-----AGUCCCGGuGC-CGc -5'
33589 3' -63.7 NC_007605.1 + 157073 0.66 0.560457
Target:  5'- aGGGaCCcUCAUGCUCuugcgcAGGGUgACGGUGg -3'
miRNA:   3'- -UCC-GGcGGUACGAG------UCCCGgUGCCGC- -5'
33589 3' -63.7 NC_007605.1 + 47063 0.66 0.589297
Target:  5'- cAGGCCGCCAacgcccagaagGcCUCGcGGGUCAUGGa- -3'
miRNA:   3'- -UCCGGCGGUa----------C-GAGU-CCCGGUGCCgc -5'
33589 3' -63.7 NC_007605.1 + 162043 0.66 0.560457
Target:  5'- cGGCCGuacaCCcgGCccugCAGGGCCGCguccaggucuGGCa -3'
miRNA:   3'- uCCGGC----GGuaCGa---GUCCCGGUG----------CCGc -5'
33589 3' -63.7 NC_007605.1 + 128042 0.66 0.570033
Target:  5'- uGGCUGUCAUGCUauuGGGUUAacgGGUGg -3'
miRNA:   3'- uCCGGCGGUACGAgu-CCCGGUg--CCGC- -5'
33589 3' -63.7 NC_007605.1 + 110213 0.67 0.522654
Target:  5'- cGGCUGUgGgUGUg-GGGGCgGCGGCGg -3'
miRNA:   3'- uCCGGCGgU-ACGagUCCCGgUGCCGC- -5'
33589 3' -63.7 NC_007605.1 + 159184 0.67 0.513353
Target:  5'- cAGGUgCuCCGaGCUCAGGGUCugGGUa -3'
miRNA:   3'- -UCCG-GcGGUaCGAGUCCCGGugCCGc -5'
33589 3' -63.7 NC_007605.1 + 146956 0.67 0.541445
Target:  5'- cGGgCGCCuc-CUCGGGGCCAgcugcCGGgGg -3'
miRNA:   3'- uCCgGCGGuacGAGUCCCGGU-----GCCgC- -5'
33589 3' -63.7 NC_007605.1 + 137749 0.67 0.541445
Target:  5'- cGGgCGCCuc-CUCGGGGCCAgcugcCGGgGg -3'
miRNA:   3'- uCCgGCGGuacGAGUCCCGGU-----GCCgC- -5'
33589 3' -63.7 NC_007605.1 + 143887 0.67 0.541445
Target:  5'- cGGgCGCCuc-CUCGGGGCCAgcugcCGGgGg -3'
miRNA:   3'- uCCgGCGGuacGAGUCCCGGU-----GCCgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.