miRNA display CGI


Results 61 - 80 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33589 3' -63.7 NC_007605.1 + 109893 0.67 0.53202
Target:  5'- -aGCCGCCAU-CgagCAGguGGCCACGGUu -3'
miRNA:   3'- ucCGGCGGUAcGa--GUC--CCGGUGCCGc -5'
33589 3' -63.7 NC_007605.1 + 61331 0.67 0.504119
Target:  5'- aAGGucccCCGCCAccUGCUCAuacucGGCCGCGGg- -3'
miRNA:   3'- -UCC----GGCGGU--ACGAGUc----CCGGUGCCgc -5'
33589 3' -63.7 NC_007605.1 + 55670 0.67 0.494959
Target:  5'- aGGGCCGCgGUGUc---GGCCAgCGGUGg -3'
miRNA:   3'- -UCCGGCGgUACGagucCCGGU-GCCGC- -5'
33589 3' -63.7 NC_007605.1 + 75011 0.67 0.538612
Target:  5'- aAGGUgGCCAcggcGCUCAagauggacgagaccGGuGCCugGGCGc -3'
miRNA:   3'- -UCCGgCGGUa---CGAGU--------------CC-CGGugCCGC- -5'
33589 3' -63.7 NC_007605.1 + 136405 0.67 0.494959
Target:  5'- uGGGCCGCCAgggggGCaaaaGGGGCUcuggaGGCa -3'
miRNA:   3'- -UCCGGCGGUa----CGag--UCCCGGug---CCGc -5'
33589 3' -63.7 NC_007605.1 + 156163 0.67 0.541445
Target:  5'- cGGgCGCCuc-CUCGGGGCCAgcugcCGGgGg -3'
miRNA:   3'- uCCgGCGGuacGAGUCCCGGU-----GCCgC- -5'
33589 3' -63.7 NC_007605.1 + 143887 0.67 0.541445
Target:  5'- cGGgCGCCuc-CUCGGGGCCAgcugcCGGgGg -3'
miRNA:   3'- uCCgGCGGuacGAGUCCCGGU-----GCCgC- -5'
33589 3' -63.7 NC_007605.1 + 148681 0.68 0.450372
Target:  5'- uGGGCCGCCAgggggGCaaaAGGGCUcuggaGGCa -3'
miRNA:   3'- -UCCGGCGGUa----CGag-UCCCGGug---CCGc -5'
33589 3' -63.7 NC_007605.1 + 122792 0.68 0.450372
Target:  5'- gGGGCCGCCA-GCccgagCGGGcGCU-CGGUGg -3'
miRNA:   3'- -UCCGGCGGUaCGa----GUCC-CGGuGCCGC- -5'
33589 3' -63.7 NC_007605.1 + 11902 0.68 0.44172
Target:  5'- ---aCGCCGUgGCUCccGGGGCCACGGa- -3'
miRNA:   3'- uccgGCGGUA-CGAG--UCCCGGUGCCgc -5'
33589 3' -63.7 NC_007605.1 + 146824 0.68 0.451243
Target:  5'- uAGGCCGaCCcucUGCcucccagacuuacccCAGGGCCAccCGGCGg -3'
miRNA:   3'- -UCCGGC-GGu--ACGa--------------GUCCCGGU--GCCGC- -5'
33589 3' -63.7 NC_007605.1 + 1558 0.68 0.440001
Target:  5'- uAGcGCCGCUcuGUGCgggggggcuggGGGGCCGCGGgGg -3'
miRNA:   3'- -UC-CGGCGG--UACGag---------UCCCGGUGCCgC- -5'
33589 3' -63.7 NC_007605.1 + 1035 0.68 0.440001
Target:  5'- uAGcGCCGCUcuGUGCgggggggcuggGGGGCCGCGGgGg -3'
miRNA:   3'- -UC-CGGCGG--UACGag---------UCCCGGUGCCgC- -5'
33589 3' -63.7 NC_007605.1 + 498 0.68 0.440001
Target:  5'- uAGcGCCGCUcuGUGCgggggggcuggGGGGCCGCGGgGg -3'
miRNA:   3'- -UC-CGGCGG--UACGag---------UCCCGGUGCCgC- -5'
33589 3' -63.7 NC_007605.1 + 149893 0.68 0.451243
Target:  5'- uAGGCCGaCCcucUGCcucccagacuuacccCAGGGCCAccCGGCGg -3'
miRNA:   3'- -UCCGGC-GGu--ACGa--------------GUCCCGGU--GCCGC- -5'
33589 3' -63.7 NC_007605.1 + 134512 0.68 0.467951
Target:  5'- cGGCUGCCAUGCU---GGCgGCGcGCa -3'
miRNA:   3'- uCCGGCGGUACGAgucCCGgUGC-CGc -5'
33589 3' -63.7 NC_007605.1 + 151664 0.68 0.476871
Target:  5'- aGGGCCaaaCAgGCggCGGGGCCugGGUa -3'
miRNA:   3'- -UCCGGcg-GUaCGa-GUCCCGGugCCGc -5'
33589 3' -63.7 NC_007605.1 + 50626 0.68 0.476871
Target:  5'- gAGGCUGCUgcGC-CGGcGGCCACcacgGGCGc -3'
miRNA:   3'- -UCCGGCGGuaCGaGUC-CCGGUG----CCGC- -5'
33589 3' -63.7 NC_007605.1 + 143755 0.68 0.451243
Target:  5'- uAGGCCGaCCcucUGCcucccagacuuacccCAGGGCCAccCGGCGg -3'
miRNA:   3'- -UCCGGC-GGu--ACGa--------------GUCCCGGU--GCCGC- -5'
33589 3' -63.7 NC_007605.1 + 155884 0.68 0.459117
Target:  5'- cGGCCuuGCCGUGCccUCuuGGGCaCGCuGGCGc -3'
miRNA:   3'- uCCGG--CGGUACG--AGu-CCCG-GUG-CCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.