miRNA display CGI


Results 41 - 60 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33589 3' -63.7 NC_007605.1 + 152477 0.71 0.324324
Target:  5'- gGGGCCGCCcggGCUgcCGGGGUCccucCGGCu -3'
miRNA:   3'- -UCCGGCGGua-CGA--GUCCCGGu---GCCGc -5'
33589 3' -63.7 NC_007605.1 + 61524 0.71 0.327134
Target:  5'- uAGGCCGCCcgggccacacgggcgAagcgGCUCguGGGGCuCGCGGUGg -3'
miRNA:   3'- -UCCGGCGG---------------Ua---CGAG--UCCCG-GUGCCGC- -5'
33589 3' -63.7 NC_007605.1 + 143270 0.71 0.324324
Target:  5'- gGGGCCGCCcggGCUgcCGGGGUCccucCGGCu -3'
miRNA:   3'- -UCCGGCGGua-CGA--GUCCCGGu---GCCGc -5'
33589 3' -63.7 NC_007605.1 + 53831 0.71 0.290708
Target:  5'- cGGCCGC--UGC-CcGGGCCAgGGCGg -3'
miRNA:   3'- uCCGGCGguACGaGuCCCGGUgCCGC- -5'
33589 3' -63.7 NC_007605.1 + 30395 0.71 0.303817
Target:  5'- cGGCCGCCccccgaGCUcCAGGGCCGgaaccccggaccCGGCu -3'
miRNA:   3'- uCCGGCGGua----CGA-GUCCCGGU------------GCCGc -5'
33589 3' -63.7 NC_007605.1 + 29070 0.71 0.303817
Target:  5'- cGGCCGCCccccgaGCUcCAGGGCCGgaaccccggaccCGGCu -3'
miRNA:   3'- uCCGGCGGua----CGA-GUCCCGGU------------GCCGc -5'
33589 3' -63.7 NC_007605.1 + 159718 0.7 0.331384
Target:  5'- aAGaGCCGCUccGUggcccCGGGaGCCACGGCGu -3'
miRNA:   3'- -UC-CGGCGGuaCGa----GUCC-CGGUGCCGC- -5'
33589 3' -63.7 NC_007605.1 + 3036 0.7 0.331384
Target:  5'- cGGCC-CCGUGCaUCucGGGCUACGcGCGc -3'
miRNA:   3'- uCCGGcGGUACG-AGu-CCCGGUGC-CGC- -5'
33589 3' -63.7 NC_007605.1 + 151324 0.7 0.338557
Target:  5'- cGGCCGCCAgacaCUgaAGGGCagaguuCACGGCGg -3'
miRNA:   3'- uCCGGCGGUac--GAg-UCCCG------GUGCCGC- -5'
33589 3' -63.7 NC_007605.1 + 133984 0.7 0.345843
Target:  5'- cGGCCGCgcugaaCGUGCcCGGGGCgGCGGg- -3'
miRNA:   3'- uCCGGCG------GUACGaGUCCCGgUGCCgc -5'
33589 3' -63.7 NC_007605.1 + 54451 0.7 0.35324
Target:  5'- cGGCCGCCGUccugGCgcgaaagAGGGCCcCGGCc -3'
miRNA:   3'- uCCGGCGGUA----CGag-----UCCCGGuGCCGc -5'
33589 3' -63.7 NC_007605.1 + 160383 0.7 0.33424
Target:  5'- gGGGCCGCCAauugGUuaAGGGCUACauuuuucaagucgugGGCGa -3'
miRNA:   3'- -UCCGGCGGUa---CGagUCCCGGUG---------------CCGC- -5'
33589 3' -63.7 NC_007605.1 + 170642 0.7 0.368367
Target:  5'- gGGGuCCGCgG-GCUcCGGGGCUGCgGGCGg -3'
miRNA:   3'- -UCC-GGCGgUaCGA-GUCCCGGUG-CCGC- -5'
33589 3' -63.7 NC_007605.1 + 159793 0.7 0.376095
Target:  5'- cAGGCC-CCccGCacCAGGGCCA-GGCGa -3'
miRNA:   3'- -UCCGGcGGuaCGa-GUCCCGGUgCCGC- -5'
33589 3' -63.7 NC_007605.1 + 111338 0.7 0.360748
Target:  5'- -cGCCGCCAgguggGC-CcuGGCCACGGCc -3'
miRNA:   3'- ucCGGCGGUa----CGaGucCCGGUGCCGc -5'
33589 3' -63.7 NC_007605.1 + 117795 0.7 0.360748
Target:  5'- gAGGCCGCCcugGCccgggCAGcGGCCgggaACGGCu -3'
miRNA:   3'- -UCCGGCGGua-CGa----GUC-CCGG----UGCCGc -5'
33589 3' -63.7 NC_007605.1 + 103941 0.7 0.35324
Target:  5'- cGGCCguGCC-UGCguu-GGCCACGGCGg -3'
miRNA:   3'- uCCGG--CGGuACGagucCCGGUGCCGC- -5'
33589 3' -63.7 NC_007605.1 + 55848 0.7 0.331384
Target:  5'- aGGGuCUGCCGcguguuugcUGCUCGGGGCaugcugccCGGCGg -3'
miRNA:   3'- -UCC-GGCGGU---------ACGAGUCCCGgu------GCCGC- -5'
33589 3' -63.7 NC_007605.1 + 39177 0.69 0.399928
Target:  5'- cGGCCGCCGgugGgUCcgcuGGGCCGCuGCc -3'
miRNA:   3'- uCCGGCGGUa--CgAGu---CCCGGUGcCGc -5'
33589 3' -63.7 NC_007605.1 + 39302 0.69 0.399928
Target:  5'- cGGCCGCCGgugGgUCcgcuGGGCCGCuGCc -3'
miRNA:   3'- uCCGGCGGUa--CgAGu---CCCGGUGcCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.