Results 61 - 80 of 178 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33589 | 3' | -63.7 | NC_007605.1 | + | 170119 | 0.69 | 0.399928 |
Target: 5'- gGGGuCCGCgG-GCUCcgGGGGCUGCgGGCGg -3' miRNA: 3'- -UCC-GGCGgUaCGAG--UCCCGGUG-CCGC- -5' |
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33589 | 3' | -63.7 | NC_007605.1 | + | 169582 | 0.69 | 0.399928 |
Target: 5'- gGGGuCCGCgG-GCUCcgGGGGCUGCgGGCGg -3' miRNA: 3'- -UCC-GGCGgUaCGAG--UCCCGGUG-CCGC- -5' |
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33589 | 3' | -63.7 | NC_007605.1 | + | 50337 | 0.69 | 0.399928 |
Target: 5'- cGGCgGagAUGCagccgacggCGGGGCCGCGGUGg -3' miRNA: 3'- uCCGgCggUACGa--------GUCCCGGUGCCGC- -5' |
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33589 | 3' | -63.7 | NC_007605.1 | + | 3163 | 0.69 | 0.391877 |
Target: 5'- cGGGCUcggagaaaugggGCCG-GC-CAGGGCCACGGg- -3' miRNA: 3'- -UCCGG------------CGGUaCGaGUCCCGGUGCCgc -5' |
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33589 | 3' | -63.7 | NC_007605.1 | + | 63047 | 0.69 | 0.391877 |
Target: 5'- cGGCgGCCGUcugGCgcgCAGGGCUGCuGGCc -3' miRNA: 3'- uCCGgCGGUA---CGa--GUCCCGGUG-CCGc -5' |
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33589 | 3' | -63.7 | NC_007605.1 | + | 39302 | 0.69 | 0.399928 |
Target: 5'- cGGCCGCCGgugGgUCcgcuGGGCCGCuGCc -3' miRNA: 3'- uCCGGCGGUa--CgAGu---CCCGGUGcCGc -5' |
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33589 | 3' | -63.7 | NC_007605.1 | + | 38303 | 0.69 | 0.399928 |
Target: 5'- cGGCCGCCGgugGgUCcgcuGGGCCGCuGCc -3' miRNA: 3'- uCCGGCGGUa--CgAGu---CCCGGUGcCGc -5' |
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33589 | 3' | -63.7 | NC_007605.1 | + | 38428 | 0.69 | 0.399928 |
Target: 5'- cGGCCGCCGgugGgUCcgcuGGGCCGCuGCc -3' miRNA: 3'- uCCGGCGGUa--CgAGu---CCCGGUGcCGc -5' |
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33589 | 3' | -63.7 | NC_007605.1 | + | 38553 | 0.69 | 0.399928 |
Target: 5'- cGGCCGCCGgugGgUCcgcuGGGCCGCuGCc -3' miRNA: 3'- uCCGGCGGUa--CgAGu---CCCGGUGcCGc -5' |
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33589 | 3' | -63.7 | NC_007605.1 | + | 61254 | 0.69 | 0.408084 |
Target: 5'- aGGGCCggaGCCGggGC-CGGGGCCugccacagGCGGCu -3' miRNA: 3'- -UCCGG---CGGUa-CGaGUCCCGG--------UGCCGc -5' |
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33589 | 3' | -63.7 | NC_007605.1 | + | 61436 | 0.69 | 0.399928 |
Target: 5'- -aGCCGUCGcgGCg-GGGGCgGCGGCGg -3' miRNA: 3'- ucCGGCGGUa-CGagUCCCGgUGCCGC- -5' |
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33589 | 3' | -63.7 | NC_007605.1 | + | 39677 | 0.69 | 0.399928 |
Target: 5'- cGGCCGCCGgugGgUCcgcuGGGCCGCuGCc -3' miRNA: 3'- uCCGGCGGUa--CgAGu---CCCGGUGcCGc -5' |
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33589 | 3' | -63.7 | NC_007605.1 | + | 39552 | 0.69 | 0.399928 |
Target: 5'- cGGCCGCCGgugGgUCcgcuGGGCCGCuGCc -3' miRNA: 3'- uCCGGCGGUa--CgAGu---CCCGGUGcCGc -5' |
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33589 | 3' | -63.7 | NC_007605.1 | + | 39427 | 0.69 | 0.399928 |
Target: 5'- cGGCCGCCGgugGgUCcgcuGGGCCGCuGCc -3' miRNA: 3'- uCCGGCGGUa--CgAGu---CCCGGUGcCGc -5' |
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33589 | 3' | -63.7 | NC_007605.1 | + | 39177 | 0.69 | 0.399928 |
Target: 5'- cGGCCGCCGgugGgUCcgcuGGGCCGCuGCc -3' miRNA: 3'- uCCGGCGGUa--CgAGu---CCCGGUGcCGc -5' |
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33589 | 3' | -63.7 | NC_007605.1 | + | 39052 | 0.69 | 0.399928 |
Target: 5'- cGGCCGCCGgugGgUCcgcuGGGCCGCuGCc -3' miRNA: 3'- uCCGGCGGUa--CgAGu---CCCGGUGcCGc -5' |
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33589 | 3' | -63.7 | NC_007605.1 | + | 38927 | 0.69 | 0.399928 |
Target: 5'- cGGCCGCCGgugGgUCcgcuGGGCCGCuGCc -3' miRNA: 3'- uCCGGCGGUa--CgAGu---CCCGGUGcCGc -5' |
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33589 | 3' | -63.7 | NC_007605.1 | + | 2681 | 0.69 | 0.423863 |
Target: 5'- cGGCC-CCGgagcagaUGC-CAGGGCgGCGGCc -3' miRNA: 3'- uCCGGcGGU-------ACGaGUCCCGgUGCCGc -5' |
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33589 | 3' | -63.7 | NC_007605.1 | + | 38678 | 0.69 | 0.399928 |
Target: 5'- cGGCCGCCGgugGgUCcgcuGGGCCGCuGCc -3' miRNA: 3'- uCCGGCGGUa--CgAGu---CCCGGUGcCGc -5' |
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33589 | 3' | -63.7 | NC_007605.1 | + | 38803 | 0.69 | 0.399928 |
Target: 5'- cGGCCGCCGgugGgUCcgcuGGGCCGCuGCc -3' miRNA: 3'- uCCGGCGGUa--CgAGu---CCCGGUGcCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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