miRNA display CGI


Results 81 - 100 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33589 3' -63.7 NC_007605.1 + 167217 0.69 0.383932
Target:  5'- -cGCUGCCcgGC-CAGGGCCAUcuccaccaGGCa -3'
miRNA:   3'- ucCGGCGGuaCGaGUCCCGGUG--------CCGc -5'
33589 3' -63.7 NC_007605.1 + 158879 0.69 0.383932
Target:  5'- gAGG-CGCCAgGCgCGGGGCCGguCGGCu -3'
miRNA:   3'- -UCCgGCGGUaCGaGUCCCGGU--GCCGc -5'
33589 3' -63.7 NC_007605.1 + 140466 0.69 0.383932
Target:  5'- gAGG-CGCCAgGCgCGGGGCCGguCGGCu -3'
miRNA:   3'- -UCCgGCGGUaCGaGUCCCGGU--GCCGc -5'
33589 3' -63.7 NC_007605.1 + 137397 0.69 0.383932
Target:  5'- gAGG-CGCCAgGCgCGGGGCCGguCGGCu -3'
miRNA:   3'- -UCCgGCGGUaCGaGUCCCGGU--GCCGc -5'
33589 3' -63.7 NC_007605.1 + 168623 0.69 0.399928
Target:  5'- aGGGCCGagaaCA-GCUCgAGGGCCgucugcACGGCc -3'
miRNA:   3'- -UCCGGCg---GUaCGAG-UCCCGG------UGCCGc -5'
33589 3' -63.7 NC_007605.1 + 38927 0.69 0.399928
Target:  5'- cGGCCGCCGgugGgUCcgcuGGGCCGCuGCc -3'
miRNA:   3'- uCCGGCGGUa--CgAGu---CCCGGUGcCGc -5'
33589 3' -63.7 NC_007605.1 + 155810 0.69 0.383932
Target:  5'- gAGG-CGCCAgGCgCGGGGCCGguCGGCu -3'
miRNA:   3'- -UCCgGCGGUaCGaGUCCCGGU--GCCGc -5'
33589 3' -63.7 NC_007605.1 + 2681 0.69 0.423863
Target:  5'- cGGCC-CCGgagcagaUGC-CAGGGCgGCGGCc -3'
miRNA:   3'- uCCGGcGGU-------ACGaGUCCCGgUGCCGc -5'
33589 3' -63.7 NC_007605.1 + 91735 0.69 0.408084
Target:  5'- gGGGcCCGCag-GCgCGGGGCCuCGGCc -3'
miRNA:   3'- -UCC-GGCGguaCGaGUCCCGGuGCCGc -5'
33589 3' -63.7 NC_007605.1 + 149673 0.69 0.383932
Target:  5'- gAGG-CGCCAgGCgCGGGGCCGguCGGCu -3'
miRNA:   3'- -UCCgGCGGUaCGaGUCCCGGU--GCCGc -5'
33589 3' -63.7 NC_007605.1 + 11902 0.68 0.44172
Target:  5'- ---aCGCCGUgGCUCccGGGGCCACGGa- -3'
miRNA:   3'- uccgGCGGUA-CGAG--UCCCGGUGCCgc -5'
33589 3' -63.7 NC_007605.1 + 498 0.68 0.440001
Target:  5'- uAGcGCCGCUcuGUGCgggggggcuggGGGGCCGCGGgGg -3'
miRNA:   3'- -UC-CGGCGG--UACGag---------UCCCGGUGCCgC- -5'
33589 3' -63.7 NC_007605.1 + 155884 0.68 0.459117
Target:  5'- cGGCCuuGCCGUGCccUCuuGGGCaCGCuGGCGc -3'
miRNA:   3'- uCCGG--CGGUACG--AGu-CCCG-GUG-CCGC- -5'
33589 3' -63.7 NC_007605.1 + 2095 0.68 0.440001
Target:  5'- uAGcGCCGCUcuGUGCgggggggcuggGGGGCCGCGGgGg -3'
miRNA:   3'- -UC-CGGCGG--UACGag---------UCCCGGUGCCgC- -5'
33589 3' -63.7 NC_007605.1 + 1558 0.68 0.440001
Target:  5'- uAGcGCCGCUcuGUGCgggggggcuggGGGGCCGCGGgGg -3'
miRNA:   3'- -UC-CGGCGG--UACGag---------UCCCGGUGCCgC- -5'
33589 3' -63.7 NC_007605.1 + 151664 0.68 0.476871
Target:  5'- aGGGCCaaaCAgGCggCGGGGCCugGGUa -3'
miRNA:   3'- -UCCGGcg-GUaCGa-GUCCCGGugCCGc -5'
33589 3' -63.7 NC_007605.1 + 50626 0.68 0.476871
Target:  5'- gAGGCUGCUgcGC-CGGcGGCCACcacgGGCGc -3'
miRNA:   3'- -UCCGGCGGuaCGaGUC-CCGGUG----CCGC- -5'
33589 3' -63.7 NC_007605.1 + 4846 0.68 0.46264
Target:  5'- cAGGUgGCCGUGCUaugcgccccgggcacCAGGGgCCAugaaagccuccUGGCGg -3'
miRNA:   3'- -UCCGgCGGUACGA---------------GUCCC-GGU-----------GCCGC- -5'
33589 3' -63.7 NC_007605.1 + 134512 0.68 0.467951
Target:  5'- cGGCUGCCAUGCU---GGCgGCGcGCa -3'
miRNA:   3'- uCCGGCGGUACGAgucCCGgUGC-CGc -5'
33589 3' -63.7 NC_007605.1 + 1035 0.68 0.440001
Target:  5'- uAGcGCCGCUcuGUGCgggggggcuggGGGGCCGCGGgGg -3'
miRNA:   3'- -UC-CGGCGG--UACGag---------UCCCGGUGCCgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.