miRNA display CGI


Results 101 - 120 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33589 3' -63.7 NC_007605.1 + 1558 0.68 0.440001
Target:  5'- uAGcGCCGCUcuGUGCgggggggcuggGGGGCCGCGGgGg -3'
miRNA:   3'- -UC-CGGCGG--UACGag---------UCCCGGUGCCgC- -5'
33589 3' -63.7 NC_007605.1 + 2095 0.68 0.440001
Target:  5'- uAGcGCCGCUcuGUGCgggggggcuggGGGGCCGCGGgGg -3'
miRNA:   3'- -UC-CGGCGG--UACGag---------UCCCGGUGCCgC- -5'
33589 3' -63.7 NC_007605.1 + 11902 0.68 0.44172
Target:  5'- ---aCGCCGUgGCUCccGGGGCCACGGa- -3'
miRNA:   3'- uccgGCGGUA-CGAG--UCCCGGUGCCgc -5'
33589 3' -63.7 NC_007605.1 + 122792 0.68 0.450372
Target:  5'- gGGGCCGCCA-GCccgagCGGGcGCU-CGGUGg -3'
miRNA:   3'- -UCCGGCGGUaCGa----GUCC-CGGuGCCGC- -5'
33589 3' -63.7 NC_007605.1 + 143755 0.68 0.451243
Target:  5'- uAGGCCGaCCcucUGCcucccagacuuacccCAGGGCCAccCGGCGg -3'
miRNA:   3'- -UCCGGC-GGu--ACGa--------------GUCCCGGU--GCCGC- -5'
33589 3' -63.7 NC_007605.1 + 155884 0.68 0.459117
Target:  5'- cGGCCuuGCCGUGCccUCuuGGGCaCGCuGGCGc -3'
miRNA:   3'- uCCGG--CGGUACG--AGu-CCCG-GUG-CCGC- -5'
33589 3' -63.7 NC_007605.1 + 4846 0.68 0.46264
Target:  5'- cAGGUgGCCGUGCUaugcgccccgggcacCAGGGgCCAugaaagccuccUGGCGg -3'
miRNA:   3'- -UCCGgCGGUACGA---------------GUCCC-GGU-----------GCCGC- -5'
33589 3' -63.7 NC_007605.1 + 134512 0.68 0.467951
Target:  5'- cGGCUGCCAUGCU---GGCgGCGcGCa -3'
miRNA:   3'- uCCGGCGGUACGAgucCCGgUGC-CGc -5'
33589 3' -63.7 NC_007605.1 + 50626 0.68 0.476871
Target:  5'- gAGGCUGCUgcGC-CGGcGGCCACcacgGGCGc -3'
miRNA:   3'- -UCCGGCGGuaCGaGUC-CCGGUG----CCGC- -5'
33589 3' -63.7 NC_007605.1 + 148681 0.68 0.450372
Target:  5'- uGGGCCGCCAgggggGCaaaAGGGCUcuggaGGCa -3'
miRNA:   3'- -UCCGGCGGUa----CGag-UCCCGGug---CCGc -5'
33589 3' -63.7 NC_007605.1 + 137618 0.68 0.451243
Target:  5'- uAGGCCGaCCcucUGCcucccagacuuacccCAGGGCCAccCGGCGg -3'
miRNA:   3'- -UCCGGC-GGu--ACGa--------------GUCCCGGU--GCCGC- -5'
33589 3' -63.7 NC_007605.1 + 55670 0.67 0.494959
Target:  5'- aGGGCCGCgGUGUc---GGCCAgCGGUGg -3'
miRNA:   3'- -UCCGGCGgUACGagucCCGGU-GCCGC- -5'
33589 3' -63.7 NC_007605.1 + 61331 0.67 0.504119
Target:  5'- aAGGucccCCGCCAccUGCUCAuacucGGCCGCGGg- -3'
miRNA:   3'- -UCC----GGCGGU--ACGAGUc----CCGGUGCCgc -5'
33589 3' -63.7 NC_007605.1 + 115435 0.67 0.541445
Target:  5'- gAGGUcauaCGUUuuaggGUGCUCGaccuGGGCCGCGGCc -3'
miRNA:   3'- -UCCG----GCGG-----UACGAGU----CCCGGUGCCGc -5'
33589 3' -63.7 NC_007605.1 + 110336 0.67 0.513353
Target:  5'- aGGGCCGUC-UGCgcccccaCGGGGCCACacGCc -3'
miRNA:   3'- -UCCGGCGGuACGa------GUCCCGGUGc-CGc -5'
33589 3' -63.7 NC_007605.1 + 156224 0.67 0.522654
Target:  5'- uGGCUGCCugcaAUGCUCugcuggccacugAGGGUC-CGGCc -3'
miRNA:   3'- uCCGGCGG----UACGAG------------UCCCGGuGCCGc -5'
33589 3' -63.7 NC_007605.1 + 157432 0.67 0.522654
Target:  5'- cGGCgGCggggGUGCUCccgcGGGCCGCGGaUGg -3'
miRNA:   3'- uCCGgCGg---UACGAGu---CCCGGUGCC-GC- -5'
33589 3' -63.7 NC_007605.1 + 153945 0.67 0.53202
Target:  5'- cAGGuuGgCGggGCUCAGGGCCuccacgaaGGCc -3'
miRNA:   3'- -UCCggCgGUa-CGAGUCCCGGug------CCGc -5'
33589 3' -63.7 NC_007605.1 + 75011 0.67 0.538612
Target:  5'- aAGGUgGCCAcggcGCUCAagauggacgagaccGGuGCCugGGCGc -3'
miRNA:   3'- -UCCGgCGGUa---CGAGU--------------CC-CGGugCCGC- -5'
33589 3' -63.7 NC_007605.1 + 159184 0.67 0.513353
Target:  5'- cAGGUgCuCCGaGCUCAGGGUCugGGUa -3'
miRNA:   3'- -UCCG-GcGGUaCGAGUCCCGGugCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.