miRNA display CGI


Results 1 - 20 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33589 3' -63.7 NC_007605.1 + 134816 1.07 0.000827
Target:  5'- cAGGCCGCCAUGCUCAGGGCCACGGCGu -3'
miRNA:   3'- -UCCGGCGGUACGAGUCCCGGUGCCGC- -5'
33589 3' -63.7 NC_007605.1 + 42086 0.83 0.046173
Target:  5'- uGGCCGCCAUGCUgAuGGCCACGGUc -3'
miRNA:   3'- uCCGGCGGUACGAgUcCCGGUGCCGc -5'
33589 3' -63.7 NC_007605.1 + 168940 0.77 0.127276
Target:  5'- cGGGCCGCCGcccuggcaucUGCUcCGGGGCCgguGGCGg -3'
miRNA:   3'- -UCCGGCGGU----------ACGA-GUCCCGGug-CCGC- -5'
33589 3' -63.7 NC_007605.1 + 118245 0.76 0.147466
Target:  5'- gAGGCUGCCAggggccuggcGCUUGGGGCCuCGGCu -3'
miRNA:   3'- -UCCGGCGGUa---------CGAGUCCCGGuGCCGc -5'
33589 3' -63.7 NC_007605.1 + 104518 0.75 0.158622
Target:  5'- gGGGCUGagaCCAUGCUCAGuGGCCGucUGGCa -3'
miRNA:   3'- -UCCGGC---GGUACGAGUC-CCGGU--GCCGc -5'
33589 3' -63.7 NC_007605.1 + 58058 0.75 0.170534
Target:  5'- gGGGCCGCgGagGC-CGGGGCCGCGGa- -3'
miRNA:   3'- -UCCGGCGgUa-CGaGUCCCGGUGCCgc -5'
33589 3' -63.7 NC_007605.1 + 58088 0.75 0.170534
Target:  5'- gGGGCCGCgGagGC-CGGGGCCGCGGa- -3'
miRNA:   3'- -UCCGGCGgUa-CGaGUCCCGGUGCCgc -5'
33589 3' -63.7 NC_007605.1 + 8843 0.74 0.205793
Target:  5'- cGGCCGCCAgucccaugUGCUCGcucugcgagggccGGGCCcCGGCc -3'
miRNA:   3'- uCCGGCGGU--------ACGAGU-------------CCCGGuGCCGc -5'
33589 3' -63.7 NC_007605.1 + 49476 0.73 0.221273
Target:  5'- cAGGCCGCCGcauccGCUgggacCGGGGCCuuGGCa -3'
miRNA:   3'- -UCCGGCGGUa----CGA-----GUCCCGGugCCGc -5'
33589 3' -63.7 NC_007605.1 + 10897 0.73 0.242701
Target:  5'- gGGGCgGCgAUG-UCGGGGCUgcugGCGGCGg -3'
miRNA:   3'- -UCCGgCGgUACgAGUCCCGG----UGCCGC- -5'
33589 3' -63.7 NC_007605.1 + 58133 0.72 0.265828
Target:  5'- gGGGCCGCagagGC-CGGGGCCGCagaGGCc -3'
miRNA:   3'- -UCCGGCGgua-CGaGUCCCGGUG---CCGc -5'
33589 3' -63.7 NC_007605.1 + 60278 0.72 0.284322
Target:  5'- uGGCCgugucgGCCGUGgC-CAGGGCCcaccugGCGGCGg -3'
miRNA:   3'- uCCGG------CGGUAC-GaGUCCCGG------UGCCGC- -5'
33589 3' -63.7 NC_007605.1 + 53831 0.71 0.290708
Target:  5'- cGGCCGC--UGC-CcGGGCCAgGGCGg -3'
miRNA:   3'- uCCGGCGguACGaGuCCCGGUgCCGC- -5'
33589 3' -63.7 NC_007605.1 + 30905 0.71 0.297206
Target:  5'- cGGCCGCCccccgaGCUcCAGGGCCGgaaccccgaccCGGCu -3'
miRNA:   3'- uCCGGCGGua----CGA-GUCCCGGU-----------GCCGc -5'
33589 3' -63.7 NC_007605.1 + 28561 0.71 0.303817
Target:  5'- cGGCCGCCccccgaGCUcCAGGGCCGgaaccccggaccCGGCu -3'
miRNA:   3'- uCCGGCGGua----CGA-GUCCCGGU------------GCCGc -5'
33589 3' -63.7 NC_007605.1 + 28663 0.71 0.303817
Target:  5'- cGGCCGCCccccgaGCUcCAGGGCCGgaaccccggaccCGGCu -3'
miRNA:   3'- uCCGGCGGua----CGA-GUCCCGGU------------GCCGc -5'
33589 3' -63.7 NC_007605.1 + 28765 0.71 0.303817
Target:  5'- cGGCCGCCccccgaGCUcCAGGGCCGgaaccccggaccCGGCu -3'
miRNA:   3'- uCCGGCGGua----CGA-GUCCCGGU------------GCCGc -5'
33589 3' -63.7 NC_007605.1 + 28867 0.71 0.303817
Target:  5'- cGGCCGCCccccgaGCUcCAGGGCCGgaaccccggaccCGGCu -3'
miRNA:   3'- uCCGGCGGua----CGA-GUCCCGGU------------GCCGc -5'
33589 3' -63.7 NC_007605.1 + 29070 0.71 0.303817
Target:  5'- cGGCCGCCccccgaGCUcCAGGGCCGgaaccccggaccCGGCu -3'
miRNA:   3'- uCCGGCGGua----CGA-GUCCCGGU------------GCCGc -5'
33589 3' -63.7 NC_007605.1 + 28968 0.71 0.303817
Target:  5'- cGGCCGCCccccgaGCUcCAGGGCCGgaaccccggaccCGGCu -3'
miRNA:   3'- uCCGGCGGua----CGA-GUCCCGGU------------GCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.