miRNA display CGI


Results 21 - 40 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33589 3' -63.7 NC_007605.1 + 28561 0.71 0.303817
Target:  5'- cGGCCGCCccccgaGCUcCAGGGCCGgaaccccggaccCGGCu -3'
miRNA:   3'- uCCGGCGGua----CGA-GUCCCGGU------------GCCGc -5'
33589 3' -63.7 NC_007605.1 + 28663 0.71 0.303817
Target:  5'- cGGCCGCCccccgaGCUcCAGGGCCGgaaccccggaccCGGCu -3'
miRNA:   3'- uCCGGCGGua----CGA-GUCCCGGU------------GCCGc -5'
33589 3' -63.7 NC_007605.1 + 28765 0.71 0.303817
Target:  5'- cGGCCGCCccccgaGCUcCAGGGCCGgaaccccggaccCGGCu -3'
miRNA:   3'- uCCGGCGGua----CGA-GUCCCGGU------------GCCGc -5'
33589 3' -63.7 NC_007605.1 + 29172 0.71 0.303817
Target:  5'- cGGCCGCCccccgaGCUcCAGGGCCGgaaccccggaccCGGCu -3'
miRNA:   3'- uCCGGCGGua----CGA-GUCCCGGU------------GCCGc -5'
33589 3' -63.7 NC_007605.1 + 29682 0.71 0.303817
Target:  5'- cGGCCGCCccccgaGCUcCAGGGCCGgaaccccggaccCGGCu -3'
miRNA:   3'- uCCGGCGGua----CGA-GUCCCGGU------------GCCGc -5'
33589 3' -63.7 NC_007605.1 + 29580 0.71 0.303817
Target:  5'- cGGCCGCCccccgaGCUcCAGGGCCGgaaccccggaccCGGCu -3'
miRNA:   3'- uCCGGCGGua----CGA-GUCCCGGU------------GCCGc -5'
33589 3' -63.7 NC_007605.1 + 30803 0.71 0.303817
Target:  5'- cGGCCGCCccccgaGCUcCAGGGCCGgaaccccggaccCGGCu -3'
miRNA:   3'- uCCGGCGGua----CGA-GUCCCGGU------------GCCGc -5'
33589 3' -63.7 NC_007605.1 + 30701 0.71 0.303817
Target:  5'- cGGCCGCCccccgaGCUcCAGGGCCGgaaccccggaccCGGCu -3'
miRNA:   3'- uCCGGCGGua----CGA-GUCCCGGU------------GCCGc -5'
33589 3' -63.7 NC_007605.1 + 30599 0.71 0.303817
Target:  5'- cGGCCGCCccccgaGCUcCAGGGCCGgaaccccggaccCGGCu -3'
miRNA:   3'- uCCGGCGGua----CGA-GUCCCGGU------------GCCGc -5'
33589 3' -63.7 NC_007605.1 + 30497 0.71 0.303817
Target:  5'- cGGCCGCCccccgaGCUcCAGGGCCGgaaccccggaccCGGCu -3'
miRNA:   3'- uCCGGCGGua----CGA-GUCCCGGU------------GCCGc -5'
33589 3' -63.7 NC_007605.1 + 30395 0.71 0.303817
Target:  5'- cGGCCGCCccccgaGCUcCAGGGCCGgaaccccggaccCGGCu -3'
miRNA:   3'- uCCGGCGGua----CGA-GUCCCGGU------------GCCGc -5'
33589 3' -63.7 NC_007605.1 + 30293 0.71 0.303817
Target:  5'- cGGCCGCCccccgaGCUcCAGGGCCGgaaccccggaccCGGCu -3'
miRNA:   3'- uCCGGCGGua----CGA-GUCCCGGU------------GCCGc -5'
33589 3' -63.7 NC_007605.1 + 28968 0.71 0.303817
Target:  5'- cGGCCGCCccccgaGCUcCAGGGCCGgaaccccggaccCGGCu -3'
miRNA:   3'- uCCGGCGGua----CGA-GUCCCGGU------------GCCGc -5'
33589 3' -63.7 NC_007605.1 + 29070 0.71 0.303817
Target:  5'- cGGCCGCCccccgaGCUcCAGGGCCGgaaccccggaccCGGCu -3'
miRNA:   3'- uCCGGCGGua----CGA-GUCCCGGU------------GCCGc -5'
33589 3' -63.7 NC_007605.1 + 29274 0.71 0.303817
Target:  5'- cGGCCGCCccccgaGCUcCAGGGCCGgaaccccggaccCGGCu -3'
miRNA:   3'- uCCGGCGGua----CGA-GUCCCGGU------------GCCGc -5'
33589 3' -63.7 NC_007605.1 + 29376 0.71 0.303817
Target:  5'- cGGCCGCCccccgaGCUcCAGGGCCGgaaccccggaccCGGCu -3'
miRNA:   3'- uCCGGCGGua----CGA-GUCCCGGU------------GCCGc -5'
33589 3' -63.7 NC_007605.1 + 29478 0.71 0.303817
Target:  5'- cGGCCGCCccccgaGCUcCAGGGCCGgaaccccggaccCGGCu -3'
miRNA:   3'- uCCGGCGGua----CGA-GUCCCGGU------------GCCGc -5'
33589 3' -63.7 NC_007605.1 + 143270 0.71 0.324324
Target:  5'- gGGGCCGCCcggGCUgcCGGGGUCccucCGGCu -3'
miRNA:   3'- -UCCGGCGGua-CGA--GUCCCGGu---GCCGc -5'
33589 3' -63.7 NC_007605.1 + 140201 0.71 0.324324
Target:  5'- gGGGCCGCCcggGCUgcCGGGGUCccucCGGCu -3'
miRNA:   3'- -UCCGGCGGua-CGA--GUCCCGGu---GCCGc -5'
33589 3' -63.7 NC_007605.1 + 137132 0.71 0.324324
Target:  5'- gGGGCCGCCcggGCUgcCGGGGUCccucCGGCu -3'
miRNA:   3'- -UCCGGCGGua-CGA--GUCCCGGu---GCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.