miRNA display CGI


Results 61 - 80 of 178 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33589 3' -63.7 NC_007605.1 + 137397 0.69 0.383932
Target:  5'- gAGG-CGCCAgGCgCGGGGCCGguCGGCu -3'
miRNA:   3'- -UCCgGCGGUaCGaGUCCCGGU--GCCGc -5'
33589 3' -63.7 NC_007605.1 + 140466 0.69 0.383932
Target:  5'- gAGG-CGCCAgGCgCGGGGCCGguCGGCu -3'
miRNA:   3'- -UCCgGCGGUaCGaGUCCCGGU--GCCGc -5'
33589 3' -63.7 NC_007605.1 + 146604 0.69 0.383932
Target:  5'- gAGG-CGCCAgGCgCGGGGCCGguCGGCu -3'
miRNA:   3'- -UCCgGCGGUaCGaGUCCCGGU--GCCGc -5'
33589 3' -63.7 NC_007605.1 + 149673 0.69 0.383932
Target:  5'- gAGG-CGCCAgGCgCGGGGCCGguCGGCu -3'
miRNA:   3'- -UCCgGCGGUaCGaGUCCCGGU--GCCGc -5'
33589 3' -63.7 NC_007605.1 + 152741 0.69 0.383932
Target:  5'- gAGG-CGCCAgGCgCGGGGCCGguCGGCu -3'
miRNA:   3'- -UCCgGCGGUaCGaGUCCCGGU--GCCGc -5'
33589 3' -63.7 NC_007605.1 + 155810 0.69 0.383932
Target:  5'- gAGG-CGCCAgGCgCGGGGCCGguCGGCu -3'
miRNA:   3'- -UCCgGCGGUaCGaGUCCCGGU--GCCGc -5'
33589 3' -63.7 NC_007605.1 + 158879 0.69 0.383932
Target:  5'- gAGG-CGCCAgGCgCGGGGCCGguCGGCu -3'
miRNA:   3'- -UCCgGCGGUaCGaGUCCCGGU--GCCGc -5'
33589 3' -63.7 NC_007605.1 + 63047 0.69 0.391877
Target:  5'- cGGCgGCCGUcugGCgcgCAGGGCUGCuGGCc -3'
miRNA:   3'- uCCGgCGGUA---CGa--GUCCCGGUG-CCGc -5'
33589 3' -63.7 NC_007605.1 + 3163 0.69 0.391877
Target:  5'- cGGGCUcggagaaaugggGCCG-GC-CAGGGCCACGGg- -3'
miRNA:   3'- -UCCGG------------CGGUaCGaGUCCCGGUGCCgc -5'
33589 3' -63.7 NC_007605.1 + 170119 0.69 0.399928
Target:  5'- gGGGuCCGCgG-GCUCcgGGGGCUGCgGGCGg -3'
miRNA:   3'- -UCC-GGCGgUaCGAG--UCCCGGUG-CCGC- -5'
33589 3' -63.7 NC_007605.1 + 171179 0.69 0.399928
Target:  5'- gGGGuCCGCgG-GCUCcgGGGGCUGCgGGCGg -3'
miRNA:   3'- -UCC-GGCGgUaCGAG--UCCCGGUG-CCGC- -5'
33589 3' -63.7 NC_007605.1 + 39302 0.69 0.399928
Target:  5'- cGGCCGCCGgugGgUCcgcuGGGCCGCuGCc -3'
miRNA:   3'- uCCGGCGGUa--CgAGu---CCCGGUGcCGc -5'
33589 3' -63.7 NC_007605.1 + 39177 0.69 0.399928
Target:  5'- cGGCCGCCGgugGgUCcgcuGGGCCGCuGCc -3'
miRNA:   3'- uCCGGCGGUa--CgAGu---CCCGGUGcCGc -5'
33589 3' -63.7 NC_007605.1 + 39052 0.69 0.399928
Target:  5'- cGGCCGCCGgugGgUCcgcuGGGCCGCuGCc -3'
miRNA:   3'- uCCGGCGGUa--CgAGu---CCCGGUGcCGc -5'
33589 3' -63.7 NC_007605.1 + 38927 0.69 0.399928
Target:  5'- cGGCCGCCGgugGgUCcgcuGGGCCGCuGCc -3'
miRNA:   3'- uCCGGCGGUa--CgAGu---CCCGGUGcCGc -5'
33589 3' -63.7 NC_007605.1 + 38678 0.69 0.399928
Target:  5'- cGGCCGCCGgugGgUCcgcuGGGCCGCuGCc -3'
miRNA:   3'- uCCGGCGGUa--CgAGu---CCCGGUGcCGc -5'
33589 3' -63.7 NC_007605.1 + 38553 0.69 0.399928
Target:  5'- cGGCCGCCGgugGgUCcgcuGGGCCGCuGCc -3'
miRNA:   3'- uCCGGCGGUa--CgAGu---CCCGGUGcCGc -5'
33589 3' -63.7 NC_007605.1 + 38428 0.69 0.399928
Target:  5'- cGGCCGCCGgugGgUCcgcuGGGCCGCuGCc -3'
miRNA:   3'- uCCGGCGGUa--CgAGu---CCCGGUGcCGc -5'
33589 3' -63.7 NC_007605.1 + 38303 0.69 0.399928
Target:  5'- cGGCCGCCGgugGgUCcgcuGGGCCGCuGCc -3'
miRNA:   3'- uCCGGCGGUa--CgAGu---CCCGGUGcCGc -5'
33589 3' -63.7 NC_007605.1 + 38803 0.69 0.399928
Target:  5'- cGGCCGCCGgugGgUCcgcuGGGCCGCuGCc -3'
miRNA:   3'- uCCGGCGGUa--CgAGu---CCCGGUGcCGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.