miRNA display CGI


Results 101 - 120 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33589 3' -63.7 NC_007605.1 + 146824 0.68 0.451243
Target:  5'- uAGGCCGaCCcucUGCcucccagacuuacccCAGGGCCAccCGGCGg -3'
miRNA:   3'- -UCCGGC-GGu--ACGa--------------GUCCCGGU--GCCGC- -5'
33589 3' -63.7 NC_007605.1 + 143755 0.68 0.451243
Target:  5'- uAGGCCGaCCcucUGCcucccagacuuacccCAGGGCCAccCGGCGg -3'
miRNA:   3'- -UCCGGC-GGu--ACGa--------------GUCCCGGU--GCCGC- -5'
33589 3' -63.7 NC_007605.1 + 156031 0.68 0.451243
Target:  5'- uAGGCCGaCCcucUGCcucccagacuuacccCAGGGCCAccCGGCGg -3'
miRNA:   3'- -UCCGGC-GGu--ACGa--------------GUCCCGGU--GCCGC- -5'
33589 3' -63.7 NC_007605.1 + 137618 0.68 0.451243
Target:  5'- uAGGCCGaCCcucUGCcucccagacuuacccCAGGGCCAccCGGCGg -3'
miRNA:   3'- -UCCGGC-GGu--ACGa--------------GUCCCGGU--GCCGC- -5'
33589 3' -63.7 NC_007605.1 + 155884 0.68 0.459117
Target:  5'- cGGCCuuGCCGUGCccUCuuGGGCaCGCuGGCGc -3'
miRNA:   3'- uCCGG--CGGUACG--AGu-CCCG-GUG-CCGC- -5'
33589 3' -63.7 NC_007605.1 + 20518 0.68 0.459117
Target:  5'- cGGGCCGCCGagGggCA-GGCUGCGGCc -3'
miRNA:   3'- -UCCGGCGGUa-CgaGUcCCGGUGCCGc -5'
33589 3' -63.7 NC_007605.1 + 4846 0.68 0.46264
Target:  5'- cAGGUgGCCGUGCUaugcgccccgggcacCAGGGgCCAugaaagccuccUGGCGg -3'
miRNA:   3'- -UCCGgCGGUACGA---------------GUCCC-GGU-----------GCCGC- -5'
33589 3' -63.7 NC_007605.1 + 134512 0.68 0.467951
Target:  5'- cGGCUGCCAUGCU---GGCgGCGcGCa -3'
miRNA:   3'- uCCGGCGGUACGAgucCCGgUGC-CGc -5'
33589 3' -63.7 NC_007605.1 + 151664 0.68 0.476871
Target:  5'- aGGGCCaaaCAgGCggCGGGGCCugGGUa -3'
miRNA:   3'- -UCCGGcg-GUaCGa-GUCCCGGugCCGc -5'
33589 3' -63.7 NC_007605.1 + 74798 0.68 0.476871
Target:  5'- gGGGCaCGUCAgGCUCAccaucuGGGCCACcuucuuGGUGg -3'
miRNA:   3'- -UCCG-GCGGUaCGAGU------CCCGGUG------CCGC- -5'
33589 3' -63.7 NC_007605.1 + 50626 0.68 0.476871
Target:  5'- gAGGCUGCUgcGC-CGGcGGCCACcacgGGCGc -3'
miRNA:   3'- -UCCGGCGGuaCGaGUC-CCGGUG----CCGC- -5'
33589 3' -63.7 NC_007605.1 + 109844 0.67 0.485875
Target:  5'- uGGCCGCuCGUGUgCAGgaGGCgGCGGgGa -3'
miRNA:   3'- uCCGGCG-GUACGaGUC--CCGgUGCCgC- -5'
33589 3' -63.7 NC_007605.1 + 142543 0.67 0.494959
Target:  5'- uGGGCCGCCAgggggGCaaaaGGGGCUcuggaGGCa -3'
miRNA:   3'- -UCCGGCGGUa----CGag--UCCCGGug---CCGc -5'
33589 3' -63.7 NC_007605.1 + 157887 0.67 0.494959
Target:  5'- uGGGCCGCCAgggggGCaaaaGGGGCUcuggaGGCa -3'
miRNA:   3'- -UCCGGCGGUa----CGag--UCCCGGug---CCGc -5'
33589 3' -63.7 NC_007605.1 + 136405 0.67 0.494959
Target:  5'- uGGGCCGCCAgggggGCaaaaGGGGCUcuggaGGCa -3'
miRNA:   3'- -UCCGGCGGUa----CGag--UCCCGGug---CCGc -5'
33589 3' -63.7 NC_007605.1 + 55670 0.67 0.494959
Target:  5'- aGGGCCGCgGUGUc---GGCCAgCGGUGg -3'
miRNA:   3'- -UCCGGCGgUACGagucCCGGU-GCCGC- -5'
33589 3' -63.7 NC_007605.1 + 154818 0.67 0.494959
Target:  5'- uGGGCCGCCAgggggGCaaaaGGGGCUcuggaGGCa -3'
miRNA:   3'- -UCCGGCGGUa----CGag--UCCCGGug---CCGc -5'
33589 3' -63.7 NC_007605.1 + 151749 0.67 0.494959
Target:  5'- uGGGCCGCCAgggggGCaaaaGGGGCUcuggaGGCa -3'
miRNA:   3'- -UCCGGCGGUa----CGag--UCCCGGug---CCGc -5'
33589 3' -63.7 NC_007605.1 + 139474 0.67 0.494959
Target:  5'- uGGGCCGCCAgggggGCaaaaGGGGCUcuggaGGCa -3'
miRNA:   3'- -UCCGGCGGUa----CGag--UCCCGGug---CCGc -5'
33589 3' -63.7 NC_007605.1 + 145612 0.67 0.494959
Target:  5'- uGGGCCGCCAgggggGCaaaaGGGGCUcuggaGGCa -3'
miRNA:   3'- -UCCGGCGGUa----CGag--UCCCGGug---CCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.