miRNA display CGI


Results 21 - 40 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33589 3' -63.7 NC_007605.1 + 131971 0.66 0.559502
Target:  5'- cGGCCGCCcgGCUgcccccggagcgcCAGGaaccccggcuGCCccaggaccugGCGGCGg -3'
miRNA:   3'- uCCGGCGGuaCGA-------------GUCC----------CGG----------UGCCGC- -5'
33589 3' -63.7 NC_007605.1 + 132596 0.66 0.559502
Target:  5'- cGGCCGCCcgGCUgcccccggagcgcCAGGaaccccggcuGCCccaggaccugGCGGCGg -3'
miRNA:   3'- uCCGGCGGuaCGA-------------GUCC----------CGG----------UGCCGC- -5'
33589 3' -63.7 NC_007605.1 + 132221 0.66 0.559502
Target:  5'- cGGCCGCCcgGCUgcccccggagcgcCAGGaaccccggcuGCCccaggaccugGCGGCGg -3'
miRNA:   3'- uCCGGCGGuaCGA-------------GUCC----------CGG----------UGCCGC- -5'
33589 3' -63.7 NC_007605.1 + 132471 0.66 0.559502
Target:  5'- cGGCCGCCcgGCUgcccccggagcgcCAGGaaccccggcuGCCccaggaccugGCGGCGg -3'
miRNA:   3'- uCCGGCGGuaCGA-------------GUCC----------CGG----------UGCCGC- -5'
33589 3' -63.7 NC_007605.1 + 132970 0.66 0.559502
Target:  5'- cGGCCGCCcgGCUgcccccggagcgcCAGGaaccccggcuGCCccaggaccugGCGGCGg -3'
miRNA:   3'- uCCGGCGGuaCGA-------------GUCC----------CGG----------UGCCGC- -5'
33589 3' -63.7 NC_007605.1 + 132096 0.66 0.559502
Target:  5'- cGGCCGCCcgGCUgcccccggagcgcCAGGaaccccggcuGCCccaggaccugGCGGCGg -3'
miRNA:   3'- uCCGGCGGuaCGA-------------GUCC----------CGG----------UGCCGC- -5'
33589 3' -63.7 NC_007605.1 + 133095 0.66 0.559502
Target:  5'- cGGCCGCCcgGCUgcccccggagcgcCAGGaaccccggcuGCCccaggaccugGCGGCGg -3'
miRNA:   3'- uCCGGCGGuaCGA-------------GUCC----------CGG----------UGCCGC- -5'
33589 3' -63.7 NC_007605.1 + 132346 0.66 0.559502
Target:  5'- cGGCCGCCcgGCUgcccccggagcgcCAGGaaccccggcuGCCccaggaccugGCGGCGg -3'
miRNA:   3'- uCCGGCGGuaCGA-------------GUCC----------CGG----------UGCCGC- -5'
33589 3' -63.7 NC_007605.1 + 133220 0.66 0.559502
Target:  5'- cGGCCGCCcgGCUgcccccggagcgcCAGGaaccccggcuGCCccaggaccugGCGGCGg -3'
miRNA:   3'- uCCGGCGGuaCGA-------------GUCC----------CGG----------UGCCGC- -5'
33589 3' -63.7 NC_007605.1 + 31006 0.66 0.550926
Target:  5'- cGGCCGCCcccgaGCUcCAGGG-CugGGUc -3'
miRNA:   3'- uCCGGCGGua---CGA-GUCCCgGugCCGc -5'
33589 3' -63.7 NC_007605.1 + 166749 0.66 0.550926
Target:  5'- aAGGCCGCCAggagGCUUucauGGCCccUGGUGc -3'
miRNA:   3'- -UCCGGCGGUa---CGAGuc--CCGGu-GCCGC- -5'
33589 3' -63.7 NC_007605.1 + 121255 0.66 0.550926
Target:  5'- cGGCCGgcgcCCGUcCUCGGGGgcagcccaCCGCGGCc -3'
miRNA:   3'- uCCGGC----GGUAcGAGUCCC--------GGUGCCGc -5'
33589 3' -63.7 NC_007605.1 + 154664 0.66 0.550926
Target:  5'- cGaGCCGCC-UGCgccccUCGGGGCC-CGuGCa -3'
miRNA:   3'- uC-CGGCGGuACG-----AGUCCCGGuGC-CGc -5'
33589 3' -63.7 NC_007605.1 + 59375 0.66 0.550926
Target:  5'- gAGGUCucaaCCuucuggGCUC-GGGCCGCGGUGu -3'
miRNA:   3'- -UCCGGc---GGua----CGAGuCCCGGUGCCGC- -5'
33589 3' -63.7 NC_007605.1 + 132721 0.66 0.550926
Target:  5'- cGGCCGCCcgGCUgccccggagcgcCAGGaaccccggcuGCCccaggaccugGCGGCGg -3'
miRNA:   3'- uCCGGCGGuaCGA------------GUCC----------CGG----------UGCCGC- -5'
33589 3' -63.7 NC_007605.1 + 150025 0.67 0.541445
Target:  5'- cGGgCGCCuc-CUCGGGGCCAgcugcCGGgGg -3'
miRNA:   3'- uCCgGCGGuacGAGUCCCGGU-----GCCgC- -5'
33589 3' -63.7 NC_007605.1 + 153094 0.67 0.541445
Target:  5'- cGGgCGCCuc-CUCGGGGCCAgcugcCGGgGg -3'
miRNA:   3'- uCCgGCGGuacGAGUCCCGGU-----GCCgC- -5'
33589 3' -63.7 NC_007605.1 + 137749 0.67 0.541445
Target:  5'- cGGgCGCCuc-CUCGGGGCCAgcugcCGGgGg -3'
miRNA:   3'- uCCgGCGGuacGAGUCCCGGU-----GCCgC- -5'
33589 3' -63.7 NC_007605.1 + 146956 0.67 0.541445
Target:  5'- cGGgCGCCuc-CUCGGGGCCAgcugcCGGgGg -3'
miRNA:   3'- uCCgGCGGuacGAGUCCCGGU-----GCCgC- -5'
33589 3' -63.7 NC_007605.1 + 115435 0.67 0.541445
Target:  5'- gAGGUcauaCGUUuuaggGUGCUCGaccuGGGCCGCGGCc -3'
miRNA:   3'- -UCCG----GCGG-----UACGAGU----CCCGGUGCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.