miRNA display CGI


Results 41 - 60 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33589 3' -63.7 NC_007605.1 + 140818 0.67 0.541445
Target:  5'- cGGgCGCCuc-CUCGGGGCCAgcugcCGGgGg -3'
miRNA:   3'- uCCgGCGGuacGAGUCCCGGU-----GCCgC- -5'
33589 3' -63.7 NC_007605.1 + 150025 0.67 0.541445
Target:  5'- cGGgCGCCuc-CUCGGGGCCAgcugcCGGgGg -3'
miRNA:   3'- uCCgGCGGuacGAGUCCCGGU-----GCCgC- -5'
33589 3' -63.7 NC_007605.1 + 156163 0.67 0.541445
Target:  5'- cGGgCGCCuc-CUCGGGGCCAgcugcCGGgGg -3'
miRNA:   3'- uCCgGCGGuacGAGUCCCGGU-----GCCgC- -5'
33589 3' -63.7 NC_007605.1 + 153094 0.67 0.541445
Target:  5'- cGGgCGCCuc-CUCGGGGCCAgcugcCGGgGg -3'
miRNA:   3'- uCCgGCGGuacGAGUCCCGGU-----GCCgC- -5'
33589 3' -63.7 NC_007605.1 + 75011 0.67 0.538612
Target:  5'- aAGGUgGCCAcggcGCUCAagauggacgagaccGGuGCCugGGCGc -3'
miRNA:   3'- -UCCGgCGGUa---CGAGU--------------CC-CGGugCCGC- -5'
33589 3' -63.7 NC_007605.1 + 109893 0.67 0.53202
Target:  5'- -aGCCGCCAU-CgagCAGguGGCCACGGUu -3'
miRNA:   3'- ucCGGCGGUAcGa--GUC--CCGGUGCCGc -5'
33589 3' -63.7 NC_007605.1 + 153945 0.67 0.53202
Target:  5'- cAGGuuGgCGggGCUCAGGGCCuccacgaaGGCc -3'
miRNA:   3'- -UCCggCgGUa-CGAGUCCCGGug------CCGc -5'
33589 3' -63.7 NC_007605.1 + 110213 0.67 0.522654
Target:  5'- cGGCUGUgGgUGUg-GGGGCgGCGGCGg -3'
miRNA:   3'- uCCGGCGgU-ACGagUCCCGgUGCCGC- -5'
33589 3' -63.7 NC_007605.1 + 56289 0.67 0.522654
Target:  5'- cGGCCcuuuGCCugggGCUCagacuuAGGGCCGgGGCc -3'
miRNA:   3'- uCCGG----CGGua--CGAG------UCCCGGUgCCGc -5'
33589 3' -63.7 NC_007605.1 + 156224 0.67 0.522654
Target:  5'- uGGCUGCCugcaAUGCUCugcuggccacugAGGGUC-CGGCc -3'
miRNA:   3'- uCCGGCGG----UACGAG------------UCCCGGuGCCGc -5'
33589 3' -63.7 NC_007605.1 + 157432 0.67 0.522654
Target:  5'- cGGCgGCggggGUGCUCccgcGGGCCGCGGaUGg -3'
miRNA:   3'- uCCGgCGg---UACGAGu---CCCGGUGCC-GC- -5'
33589 3' -63.7 NC_007605.1 + 110336 0.67 0.513353
Target:  5'- aGGGCCGUC-UGCgcccccaCGGGGCCACacGCc -3'
miRNA:   3'- -UCCGGCGGuACGa------GUCCCGGUGc-CGc -5'
33589 3' -63.7 NC_007605.1 + 159184 0.67 0.513353
Target:  5'- cAGGUgCuCCGaGCUCAGGGUCugGGUa -3'
miRNA:   3'- -UCCG-GcGGUaCGAGUCCCGGugCCGc -5'
33589 3' -63.7 NC_007605.1 + 34253 0.67 0.513353
Target:  5'- uGGCUGgCggGCUgGGGGagGCGGCGc -3'
miRNA:   3'- uCCGGCgGuaCGAgUCCCggUGCCGC- -5'
33589 3' -63.7 NC_007605.1 + 55154 0.67 0.512426
Target:  5'- uGGCCuCCGUGUUUgccugcuGGGGCUGUGGCGa -3'
miRNA:   3'- uCCGGcGGUACGAG-------UCCCGGUGCCGC- -5'
33589 3' -63.7 NC_007605.1 + 11753 0.67 0.5115
Target:  5'- uGGCgGCCAUGCUaucggugcaaCGGGGCagggggagggugGCGGCc -3'
miRNA:   3'- uCCGgCGGUACGA----------GUCCCGg-----------UGCCGc -5'
33589 3' -63.7 NC_007605.1 + 61331 0.67 0.504119
Target:  5'- aAGGucccCCGCCAccUGCUCAuacucGGCCGCGGg- -3'
miRNA:   3'- -UCC----GGCGGU--ACGAGUc----CCGGUGCCgc -5'
33589 3' -63.7 NC_007605.1 + 49819 0.67 0.504119
Target:  5'- -aGCCGCCGggagGC-CAGGGUggaCGCGGUa -3'
miRNA:   3'- ucCGGCGGUa---CGaGUCCCG---GUGCCGc -5'
33589 3' -63.7 NC_007605.1 + 145612 0.67 0.494959
Target:  5'- uGGGCCGCCAgggggGCaaaaGGGGCUcuggaGGCa -3'
miRNA:   3'- -UCCGGCGGUa----CGag--UCCCGGug---CCGc -5'
33589 3' -63.7 NC_007605.1 + 157887 0.67 0.494959
Target:  5'- uGGGCCGCCAgggggGCaaaaGGGGCUcuggaGGCa -3'
miRNA:   3'- -UCCGGCGGUa----CGag--UCCCGGug---CCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.