Results 81 - 100 of 178 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33589 | 3' | -63.7 | NC_007605.1 | + | 143755 | 0.68 | 0.451243 |
Target: 5'- uAGGCCGaCCcucUGCcucccagacuuacccCAGGGCCAccCGGCGg -3' miRNA: 3'- -UCCGGC-GGu--ACGa--------------GUCCCGGU--GCCGC- -5' |
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33589 | 3' | -63.7 | NC_007605.1 | + | 148681 | 0.68 | 0.450372 |
Target: 5'- uGGGCCGCCAgggggGCaaaAGGGCUcuggaGGCa -3' miRNA: 3'- -UCCGGCGGUa----CGag-UCCCGGug---CCGc -5' |
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33589 | 3' | -63.7 | NC_007605.1 | + | 122792 | 0.68 | 0.450372 |
Target: 5'- gGGGCCGCCA-GCccgagCGGGcGCU-CGGUGg -3' miRNA: 3'- -UCCGGCGGUaCGa----GUCC-CGGuGCCGC- -5' |
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33589 | 3' | -63.7 | NC_007605.1 | + | 11902 | 0.68 | 0.44172 |
Target: 5'- ---aCGCCGUgGCUCccGGGGCCACGGa- -3' miRNA: 3'- uccgGCGGUA-CGAG--UCCCGGUGCCgc -5' |
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33589 | 3' | -63.7 | NC_007605.1 | + | 1035 | 0.68 | 0.440001 |
Target: 5'- uAGcGCCGCUcuGUGCgggggggcuggGGGGCCGCGGgGg -3' miRNA: 3'- -UC-CGGCGG--UACGag---------UCCCGGUGCCgC- -5' |
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33589 | 3' | -63.7 | NC_007605.1 | + | 1558 | 0.68 | 0.440001 |
Target: 5'- uAGcGCCGCUcuGUGCgggggggcuggGGGGCCGCGGgGg -3' miRNA: 3'- -UC-CGGCGG--UACGag---------UCCCGGUGCCgC- -5' |
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33589 | 3' | -63.7 | NC_007605.1 | + | 2095 | 0.68 | 0.440001 |
Target: 5'- uAGcGCCGCUcuGUGCgggggggcuggGGGGCCGCGGgGg -3' miRNA: 3'- -UC-CGGCGG--UACGag---------UCCCGGUGCCgC- -5' |
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33589 | 3' | -63.7 | NC_007605.1 | + | 498 | 0.68 | 0.440001 |
Target: 5'- uAGcGCCGCUcuGUGCgggggggcuggGGGGCCGCGGgGg -3' miRNA: 3'- -UC-CGGCGG--UACGag---------UCCCGGUGCCgC- -5' |
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33589 | 3' | -63.7 | NC_007605.1 | + | 2681 | 0.69 | 0.423863 |
Target: 5'- cGGCC-CCGgagcagaUGC-CAGGGCgGCGGCc -3' miRNA: 3'- uCCGGcGGU-------ACGaGUCCCGgUGCCGc -5' |
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33589 | 3' | -63.7 | NC_007605.1 | + | 61254 | 0.69 | 0.408084 |
Target: 5'- aGGGCCggaGCCGggGC-CGGGGCCugccacagGCGGCu -3' miRNA: 3'- -UCCGG---CGGUa-CGaGUCCCGG--------UGCCGc -5' |
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33589 | 3' | -63.7 | NC_007605.1 | + | 91735 | 0.69 | 0.408084 |
Target: 5'- gGGGcCCGCag-GCgCGGGGCCuCGGCc -3' miRNA: 3'- -UCC-GGCGguaCGaGUCCCGGuGCCGc -5' |
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33589 | 3' | -63.7 | NC_007605.1 | + | 38553 | 0.69 | 0.399928 |
Target: 5'- cGGCCGCCGgugGgUCcgcuGGGCCGCuGCc -3' miRNA: 3'- uCCGGCGGUa--CgAGu---CCCGGUGcCGc -5' |
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33589 | 3' | -63.7 | NC_007605.1 | + | 171179 | 0.69 | 0.399928 |
Target: 5'- gGGGuCCGCgG-GCUCcgGGGGCUGCgGGCGg -3' miRNA: 3'- -UCC-GGCGgUaCGAG--UCCCGGUG-CCGC- -5' |
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33589 | 3' | -63.7 | NC_007605.1 | + | 38428 | 0.69 | 0.399928 |
Target: 5'- cGGCCGCCGgugGgUCcgcuGGGCCGCuGCc -3' miRNA: 3'- uCCGGCGGUa--CgAGu---CCCGGUGcCGc -5' |
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33589 | 3' | -63.7 | NC_007605.1 | + | 38927 | 0.69 | 0.399928 |
Target: 5'- cGGCCGCCGgugGgUCcgcuGGGCCGCuGCc -3' miRNA: 3'- uCCGGCGGUa--CgAGu---CCCGGUGcCGc -5' |
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33589 | 3' | -63.7 | NC_007605.1 | + | 38678 | 0.69 | 0.399928 |
Target: 5'- cGGCCGCCGgugGgUCcgcuGGGCCGCuGCc -3' miRNA: 3'- uCCGGCGGUa--CgAGu---CCCGGUGcCGc -5' |
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33589 | 3' | -63.7 | NC_007605.1 | + | 39302 | 0.69 | 0.399928 |
Target: 5'- cGGCCGCCGgugGgUCcgcuGGGCCGCuGCc -3' miRNA: 3'- uCCGGCGGUa--CgAGu---CCCGGUGcCGc -5' |
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33589 | 3' | -63.7 | NC_007605.1 | + | 39177 | 0.69 | 0.399928 |
Target: 5'- cGGCCGCCGgugGgUCcgcuGGGCCGCuGCc -3' miRNA: 3'- uCCGGCGGUa--CgAGu---CCCGGUGcCGc -5' |
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33589 | 3' | -63.7 | NC_007605.1 | + | 38803 | 0.69 | 0.399928 |
Target: 5'- cGGCCGCCGgugGgUCcgcuGGGCCGCuGCc -3' miRNA: 3'- uCCGGCGGUa--CgAGu---CCCGGUGcCGc -5' |
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33589 | 3' | -63.7 | NC_007605.1 | + | 38303 | 0.69 | 0.399928 |
Target: 5'- cGGCCGCCGgugGgUCcgcuGGGCCGCuGCc -3' miRNA: 3'- uCCGGCGGUa--CgAGu---CCCGGUGcCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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