miRNA display CGI


Results 61 - 80 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33589 3' -63.7 NC_007605.1 + 53831 0.71 0.290708
Target:  5'- cGGCCGC--UGC-CcGGGCCAgGGCGg -3'
miRNA:   3'- uCCGGCGguACGaGuCCCGGUgCCGC- -5'
33589 3' -63.7 NC_007605.1 + 54451 0.7 0.35324
Target:  5'- cGGCCGCCGUccugGCgcgaaagAGGGCCcCGGCc -3'
miRNA:   3'- uCCGGCGGUA----CGag-----UCCCGGuGCCGc -5'
33589 3' -63.7 NC_007605.1 + 55154 0.67 0.512426
Target:  5'- uGGCCuCCGUGUUUgccugcuGGGGCUGUGGCGa -3'
miRNA:   3'- uCCGGcGGUACGAG-------UCCCGGUGCCGC- -5'
33589 3' -63.7 NC_007605.1 + 55670 0.67 0.494959
Target:  5'- aGGGCCGCgGUGUc---GGCCAgCGGUGg -3'
miRNA:   3'- -UCCGGCGgUACGagucCCGGU-GCCGC- -5'
33589 3' -63.7 NC_007605.1 + 55848 0.7 0.331384
Target:  5'- aGGGuCUGCCGcguguuugcUGCUCGGGGCaugcugccCGGCGg -3'
miRNA:   3'- -UCC-GGCGGU---------ACGAGUCCCGgu------GCCGC- -5'
33589 3' -63.7 NC_007605.1 + 56157 0.66 0.570033
Target:  5'- cGGGUauagaGCaUAUGC-CGGuGGCCGCGGCc -3'
miRNA:   3'- -UCCGg----CG-GUACGaGUC-CCGGUGCCGc -5'
33589 3' -63.7 NC_007605.1 + 56289 0.67 0.522654
Target:  5'- cGGCCcuuuGCCugggGCUCagacuuAGGGCCGgGGCc -3'
miRNA:   3'- uCCGG----CGGua--CGAG------UCCCGGUgCCGc -5'
33589 3' -63.7 NC_007605.1 + 58058 0.75 0.170534
Target:  5'- gGGGCCGCgGagGC-CGGGGCCGCGGa- -3'
miRNA:   3'- -UCCGGCGgUa-CGaGUCCCGGUGCCgc -5'
33589 3' -63.7 NC_007605.1 + 58088 0.75 0.170534
Target:  5'- gGGGCCGCgGagGC-CGGGGCCGCGGa- -3'
miRNA:   3'- -UCCGGCGgUa-CGaGUCCCGGUGCCgc -5'
33589 3' -63.7 NC_007605.1 + 58133 0.72 0.265828
Target:  5'- gGGGCCGCagagGC-CGGGGCCGCagaGGCc -3'
miRNA:   3'- -UCCGGCGgua-CGaGUCCCGGUG---CCGc -5'
33589 3' -63.7 NC_007605.1 + 59375 0.66 0.550926
Target:  5'- gAGGUCucaaCCuucuggGCUC-GGGCCGCGGUGu -3'
miRNA:   3'- -UCCGGc---GGua----CGAGuCCCGGUGCCGC- -5'
33589 3' -63.7 NC_007605.1 + 60278 0.72 0.284322
Target:  5'- uGGCCgugucgGCCGUGgC-CAGGGCCcaccugGCGGCGg -3'
miRNA:   3'- uCCGG------CGGUAC-GaGUCCCGG------UGCCGC- -5'
33589 3' -63.7 NC_007605.1 + 61254 0.69 0.408084
Target:  5'- aGGGCCggaGCCGggGC-CGGGGCCugccacagGCGGCu -3'
miRNA:   3'- -UCCGG---CGGUa-CGaGUCCCGG--------UGCCGc -5'
33589 3' -63.7 NC_007605.1 + 61331 0.67 0.504119
Target:  5'- aAGGucccCCGCCAccUGCUCAuacucGGCCGCGGg- -3'
miRNA:   3'- -UCC----GGCGGU--ACGAGUc----CCGGUGCCgc -5'
33589 3' -63.7 NC_007605.1 + 61436 0.69 0.399928
Target:  5'- -aGCCGUCGcgGCg-GGGGCgGCGGCGg -3'
miRNA:   3'- ucCGGCGGUa-CGagUCCCGgUGCCGC- -5'
33589 3' -63.7 NC_007605.1 + 61524 0.71 0.327134
Target:  5'- uAGGCCGCCcgggccacacgggcgAagcgGCUCguGGGGCuCGCGGUGg -3'
miRNA:   3'- -UCCGGCGG---------------Ua---CGAG--UCCCG-GUGCCGC- -5'
33589 3' -63.7 NC_007605.1 + 63047 0.69 0.391877
Target:  5'- cGGCgGCCGUcugGCgcgCAGGGCUGCuGGCc -3'
miRNA:   3'- uCCGgCGGUA---CGa--GUCCCGGUG-CCGc -5'
33589 3' -63.7 NC_007605.1 + 66243 0.66 0.570033
Target:  5'- aAGGCCGCCGauCUgGGGGUgAUGGa- -3'
miRNA:   3'- -UCCGGCGGUacGAgUCCCGgUGCCgc -5'
33589 3' -63.7 NC_007605.1 + 73460 0.66 0.589297
Target:  5'- cGGGCCcagGCCAUGCacauguccuccUCuGGGUagACGGUGg -3'
miRNA:   3'- -UCCGG---CGGUACG-----------AGuCCCGg-UGCCGC- -5'
33589 3' -63.7 NC_007605.1 + 74798 0.68 0.476871
Target:  5'- gGGGCaCGUCAgGCUCAccaucuGGGCCACcuucuuGGUGg -3'
miRNA:   3'- -UCCG-GCGGUaCGAGU------CCCGGUG------CCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.