miRNA display CGI


Results 81 - 100 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33589 3' -63.7 NC_007605.1 + 75011 0.67 0.538612
Target:  5'- aAGGUgGCCAcggcGCUCAagauggacgagaccGGuGCCugGGCGc -3'
miRNA:   3'- -UCCGgCGGUa---CGAGU--------------CC-CGGugCCGC- -5'
33589 3' -63.7 NC_007605.1 + 76100 0.66 0.596069
Target:  5'- cAGGCCuCCAUGgUgaugaucuaacagaCAGGGaCgGCGGCGc -3'
miRNA:   3'- -UCCGGcGGUACgA--------------GUCCC-GgUGCCGC- -5'
33589 3' -63.7 NC_007605.1 + 91735 0.69 0.408084
Target:  5'- gGGGcCCGCag-GCgCGGGGCCuCGGCc -3'
miRNA:   3'- -UCC-GGCGguaCGaGUCCCGGuGCCGc -5'
33589 3' -63.7 NC_007605.1 + 98314 0.66 0.589297
Target:  5'- cGGCCagGCCAccUGC-CGGGGCCAgUGGa- -3'
miRNA:   3'- uCCGG--CGGU--ACGaGUCCCGGU-GCCgc -5'
33589 3' -63.7 NC_007605.1 + 103941 0.7 0.35324
Target:  5'- cGGCCguGCC-UGCguu-GGCCACGGCGg -3'
miRNA:   3'- uCCGG--CGGuACGagucCCGGUGCCGC- -5'
33589 3' -63.7 NC_007605.1 + 104518 0.75 0.158622
Target:  5'- gGGGCUGagaCCAUGCUCAGuGGCCGucUGGCa -3'
miRNA:   3'- -UCCGGC---GGUACGAGUC-CCGGU--GCCGc -5'
33589 3' -63.7 NC_007605.1 + 109461 0.66 0.598974
Target:  5'- cGGCCGCgGacaUCAaGGCCAUGGCc -3'
miRNA:   3'- uCCGGCGgUacgAGUcCCGGUGCCGc -5'
33589 3' -63.7 NC_007605.1 + 109844 0.67 0.485875
Target:  5'- uGGCCGCuCGUGUgCAGgaGGCgGCGGgGa -3'
miRNA:   3'- uCCGGCG-GUACGaGUC--CCGgUGCCgC- -5'
33589 3' -63.7 NC_007605.1 + 109893 0.67 0.53202
Target:  5'- -aGCCGCCAU-CgagCAGguGGCCACGGUu -3'
miRNA:   3'- ucCGGCGGUAcGa--GUC--CCGGUGCCGc -5'
33589 3' -63.7 NC_007605.1 + 110140 0.66 0.589297
Target:  5'- gAGGCCgagGCCGUGgaCAGacgaGCC-CGGCGc -3'
miRNA:   3'- -UCCGG---CGGUACgaGUCc---CGGuGCCGC- -5'
33589 3' -63.7 NC_007605.1 + 110213 0.67 0.522654
Target:  5'- cGGCUGUgGgUGUg-GGGGCgGCGGCGg -3'
miRNA:   3'- uCCGGCGgU-ACGagUCCCGgUGCCGC- -5'
33589 3' -63.7 NC_007605.1 + 110336 0.67 0.513353
Target:  5'- aGGGCCGUC-UGCgcccccaCGGGGCCACacGCc -3'
miRNA:   3'- -UCCGGCGGuACGa------GUCCCGGUGc-CGc -5'
33589 3' -63.7 NC_007605.1 + 111338 0.7 0.360748
Target:  5'- -cGCCGCCAgguggGC-CcuGGCCACGGCc -3'
miRNA:   3'- ucCGGCGGUa----CGaGucCCGGUGCCGc -5'
33589 3' -63.7 NC_007605.1 + 113713 0.66 0.570033
Target:  5'- uGGGUacguaGUCGuUGUUCAGGGCCgugcAUGGCa -3'
miRNA:   3'- -UCCGg----CGGU-ACGAGUCCCGG----UGCCGc -5'
33589 3' -63.7 NC_007605.1 + 115435 0.67 0.541445
Target:  5'- gAGGUcauaCGUUuuaggGUGCUCGaccuGGGCCGCGGCc -3'
miRNA:   3'- -UCCG----GCGG-----UACGAGU----CCCGGUGCCGc -5'
33589 3' -63.7 NC_007605.1 + 117795 0.7 0.360748
Target:  5'- gAGGCCGCCcugGCccgggCAGcGGCCgggaACGGCu -3'
miRNA:   3'- -UCCGGCGGua-CGa----GUC-CCGG----UGCCGc -5'
33589 3' -63.7 NC_007605.1 + 118245 0.76 0.147466
Target:  5'- gAGGCUGCCAggggccuggcGCUUGGGGCCuCGGCu -3'
miRNA:   3'- -UCCGGCGGUa---------CGAGUCCCGGuGCCGc -5'
33589 3' -63.7 NC_007605.1 + 121255 0.66 0.550926
Target:  5'- cGGCCGgcgcCCGUcCUCGGGGgcagcccaCCGCGGCc -3'
miRNA:   3'- uCCGGC----GGUAcGAGUCCC--------GGUGCCGc -5'
33589 3' -63.7 NC_007605.1 + 122525 0.66 0.579648
Target:  5'- uGGCCcguuguagGCCAgGgUCuGGGCCACGuGCu -3'
miRNA:   3'- uCCGG--------CGGUaCgAGuCCCGGUGC-CGc -5'
33589 3' -63.7 NC_007605.1 + 122792 0.68 0.450372
Target:  5'- gGGGCCGCCA-GCccgagCGGGcGCU-CGGUGg -3'
miRNA:   3'- -UCCGGCGGUaCGa----GUCC-CGGuGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.