miRNA display CGI


Results 41 - 60 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33589 3' -63.7 NC_007605.1 + 149408 0.71 0.324324
Target:  5'- gGGGCCGCCcggGCUgcCGGGGUCccucCGGCu -3'
miRNA:   3'- -UCCGGCGGua-CGA--GUCCCGGu---GCCGc -5'
33589 3' -63.7 NC_007605.1 + 149064 0.66 0.598974
Target:  5'- aAGGCCuggGCCAUGCUCuggccGGUCACGa-- -3'
miRNA:   3'- -UCCGG---CGGUACGAGuc---CCGGUGCcgc -5'
33589 3' -63.7 NC_007605.1 + 148681 0.68 0.450372
Target:  5'- uGGGCCGCCAgggggGCaaaAGGGCUcuggaGGCa -3'
miRNA:   3'- -UCCGGCGGUa----CGag-UCCCGGug---CCGc -5'
33589 3' -63.7 NC_007605.1 + 146956 0.67 0.541445
Target:  5'- cGGgCGCCuc-CUCGGGGCCAgcugcCGGgGg -3'
miRNA:   3'- uCCgGCGGuacGAGUCCCGGU-----GCCgC- -5'
33589 3' -63.7 NC_007605.1 + 146824 0.68 0.451243
Target:  5'- uAGGCCGaCCcucUGCcucccagacuuacccCAGGGCCAccCGGCGg -3'
miRNA:   3'- -UCCGGC-GGu--ACGa--------------GUCCCGGU--GCCGC- -5'
33589 3' -63.7 NC_007605.1 + 146604 0.69 0.383932
Target:  5'- gAGG-CGCCAgGCgCGGGGCCGguCGGCu -3'
miRNA:   3'- -UCCgGCGGUaCGaGUCCCGGU--GCCGc -5'
33589 3' -63.7 NC_007605.1 + 146339 0.71 0.324324
Target:  5'- gGGGCCGCCcggGCUgcCGGGGUCccucCGGCu -3'
miRNA:   3'- -UCCGGCGGua-CGA--GUCCCGGu---GCCGc -5'
33589 3' -63.7 NC_007605.1 + 145612 0.67 0.494959
Target:  5'- uGGGCCGCCAgggggGCaaaaGGGGCUcuggaGGCa -3'
miRNA:   3'- -UCCGGCGGUa----CGag--UCCCGGug---CCGc -5'
33589 3' -63.7 NC_007605.1 + 143887 0.67 0.541445
Target:  5'- cGGgCGCCuc-CUCGGGGCCAgcugcCGGgGg -3'
miRNA:   3'- uCCgGCGGuacGAGUCCCGGU-----GCCgC- -5'
33589 3' -63.7 NC_007605.1 + 143755 0.68 0.451243
Target:  5'- uAGGCCGaCCcucUGCcucccagacuuacccCAGGGCCAccCGGCGg -3'
miRNA:   3'- -UCCGGC-GGu--ACGa--------------GUCCCGGU--GCCGC- -5'
33589 3' -63.7 NC_007605.1 + 143535 0.69 0.383932
Target:  5'- gAGG-CGCCAgGCgCGGGGCCGguCGGCu -3'
miRNA:   3'- -UCCgGCGGUaCGaGUCCCGGU--GCCGc -5'
33589 3' -63.7 NC_007605.1 + 143270 0.71 0.324324
Target:  5'- gGGGCCGCCcggGCUgcCGGGGUCccucCGGCu -3'
miRNA:   3'- -UCCGGCGGua-CGA--GUCCCGGu---GCCGc -5'
33589 3' -63.7 NC_007605.1 + 142543 0.67 0.494959
Target:  5'- uGGGCCGCCAgggggGCaaaaGGGGCUcuggaGGCa -3'
miRNA:   3'- -UCCGGCGGUa----CGag--UCCCGGug---CCGc -5'
33589 3' -63.7 NC_007605.1 + 140818 0.67 0.541445
Target:  5'- cGGgCGCCuc-CUCGGGGCCAgcugcCGGgGg -3'
miRNA:   3'- uCCgGCGGuacGAGUCCCGGU-----GCCgC- -5'
33589 3' -63.7 NC_007605.1 + 140466 0.69 0.383932
Target:  5'- gAGG-CGCCAgGCgCGGGGCCGguCGGCu -3'
miRNA:   3'- -UCCgGCGGUaCGaGUCCCGGU--GCCGc -5'
33589 3' -63.7 NC_007605.1 + 140201 0.71 0.324324
Target:  5'- gGGGCCGCCcggGCUgcCGGGGUCccucCGGCu -3'
miRNA:   3'- -UCCGGCGGua-CGA--GUCCCGGu---GCCGc -5'
33589 3' -63.7 NC_007605.1 + 139474 0.67 0.494959
Target:  5'- uGGGCCGCCAgggggGCaaaaGGGGCUcuggaGGCa -3'
miRNA:   3'- -UCCGGCGGUa----CGag--UCCCGGug---CCGc -5'
33589 3' -63.7 NC_007605.1 + 137749 0.67 0.541445
Target:  5'- cGGgCGCCuc-CUCGGGGCCAgcugcCGGgGg -3'
miRNA:   3'- uCCgGCGGuacGAGUCCCGGU-----GCCgC- -5'
33589 3' -63.7 NC_007605.1 + 137618 0.68 0.451243
Target:  5'- uAGGCCGaCCcucUGCcucccagacuuacccCAGGGCCAccCGGCGg -3'
miRNA:   3'- -UCCGGC-GGu--ACGa--------------GUCCCGGU--GCCGC- -5'
33589 3' -63.7 NC_007605.1 + 137397 0.69 0.383932
Target:  5'- gAGG-CGCCAgGCgCGGGGCCGguCGGCu -3'
miRNA:   3'- -UCCgGCGGUaCGaGUCCCGGU--GCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.