miRNA display CGI


Results 61 - 80 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33589 3' -63.7 NC_007605.1 + 137132 0.71 0.324324
Target:  5'- gGGGCCGCCcggGCUgcCGGGGUCccucCGGCu -3'
miRNA:   3'- -UCCGGCGGua-CGA--GUCCCGGu---GCCGc -5'
33589 3' -63.7 NC_007605.1 + 136405 0.67 0.494959
Target:  5'- uGGGCCGCCAgggggGCaaaaGGGGCUcuggaGGCa -3'
miRNA:   3'- -UCCGGCGGUa----CGag--UCCCGGug---CCGc -5'
33589 3' -63.7 NC_007605.1 + 134816 1.07 0.000827
Target:  5'- cAGGCCGCCAUGCUCAGGGCCACGGCGu -3'
miRNA:   3'- -UCCGGCGGUACGAGUCCCGGUGCCGC- -5'
33589 3' -63.7 NC_007605.1 + 134512 0.68 0.467951
Target:  5'- cGGCUGCCAUGCU---GGCgGCGcGCa -3'
miRNA:   3'- uCCGGCGGUACGAgucCCGgUGC-CGc -5'
33589 3' -63.7 NC_007605.1 + 133984 0.7 0.345843
Target:  5'- cGGCCGCgcugaaCGUGCcCGGGGCgGCGGg- -3'
miRNA:   3'- uCCGGCG------GUACGaGUCCCGgUGCCgc -5'
33589 3' -63.7 NC_007605.1 + 133220 0.66 0.559502
Target:  5'- cGGCCGCCcgGCUgcccccggagcgcCAGGaaccccggcuGCCccaggaccugGCGGCGg -3'
miRNA:   3'- uCCGGCGGuaCGA-------------GUCC----------CGG----------UGCCGC- -5'
33589 3' -63.7 NC_007605.1 + 133095 0.66 0.559502
Target:  5'- cGGCCGCCcgGCUgcccccggagcgcCAGGaaccccggcuGCCccaggaccugGCGGCGg -3'
miRNA:   3'- uCCGGCGGuaCGA-------------GUCC----------CGG----------UGCCGC- -5'
33589 3' -63.7 NC_007605.1 + 132970 0.66 0.559502
Target:  5'- cGGCCGCCcgGCUgcccccggagcgcCAGGaaccccggcuGCCccaggaccugGCGGCGg -3'
miRNA:   3'- uCCGGCGGuaCGA-------------GUCC----------CGG----------UGCCGC- -5'
33589 3' -63.7 NC_007605.1 + 132845 0.66 0.559502
Target:  5'- cGGCCGCCcgGCUgcccccggagcgcCAGGaaccccggcuGCCccaggaccugGCGGCGg -3'
miRNA:   3'- uCCGGCGGuaCGA-------------GUCC----------CGG----------UGCCGC- -5'
33589 3' -63.7 NC_007605.1 + 132721 0.66 0.550926
Target:  5'- cGGCCGCCcgGCUgccccggagcgcCAGGaaccccggcuGCCccaggaccugGCGGCGg -3'
miRNA:   3'- uCCGGCGGuaCGA------------GUCC----------CGG----------UGCCGC- -5'
33589 3' -63.7 NC_007605.1 + 132596 0.66 0.559502
Target:  5'- cGGCCGCCcgGCUgcccccggagcgcCAGGaaccccggcuGCCccaggaccugGCGGCGg -3'
miRNA:   3'- uCCGGCGGuaCGA-------------GUCC----------CGG----------UGCCGC- -5'
33589 3' -63.7 NC_007605.1 + 132471 0.66 0.559502
Target:  5'- cGGCCGCCcgGCUgcccccggagcgcCAGGaaccccggcuGCCccaggaccugGCGGCGg -3'
miRNA:   3'- uCCGGCGGuaCGA-------------GUCC----------CGG----------UGCCGC- -5'
33589 3' -63.7 NC_007605.1 + 132346 0.66 0.559502
Target:  5'- cGGCCGCCcgGCUgcccccggagcgcCAGGaaccccggcuGCCccaggaccugGCGGCGg -3'
miRNA:   3'- uCCGGCGGuaCGA-------------GUCC----------CGG----------UGCCGC- -5'
33589 3' -63.7 NC_007605.1 + 132221 0.66 0.559502
Target:  5'- cGGCCGCCcgGCUgcccccggagcgcCAGGaaccccggcuGCCccaggaccugGCGGCGg -3'
miRNA:   3'- uCCGGCGGuaCGA-------------GUCC----------CGG----------UGCCGC- -5'
33589 3' -63.7 NC_007605.1 + 132096 0.66 0.559502
Target:  5'- cGGCCGCCcgGCUgcccccggagcgcCAGGaaccccggcuGCCccaggaccugGCGGCGg -3'
miRNA:   3'- uCCGGCGGuaCGA-------------GUCC----------CGG----------UGCCGC- -5'
33589 3' -63.7 NC_007605.1 + 131971 0.66 0.559502
Target:  5'- cGGCCGCCcgGCUgcccccggagcgcCAGGaaccccggcuGCCccaggaccugGCGGCGg -3'
miRNA:   3'- uCCGGCGGuaCGA-------------GUCC----------CGG----------UGCCGC- -5'
33589 3' -63.7 NC_007605.1 + 131353 0.66 0.597037
Target:  5'- cGGCCGCgguccuccccCGUGaacggggcgcgCuGGGCCGCGGCu -3'
miRNA:   3'- uCCGGCG----------GUACga---------GuCCCGGUGCCGc -5'
33589 3' -63.7 NC_007605.1 + 128042 0.66 0.570033
Target:  5'- uGGCUGUCAUGCUauuGGGUUAacgGGUGg -3'
miRNA:   3'- uCCGGCGGUACGAgu-CCCGGUg--CCGC- -5'
33589 3' -63.7 NC_007605.1 + 122792 0.68 0.450372
Target:  5'- gGGGCCGCCA-GCccgagCGGGcGCU-CGGUGg -3'
miRNA:   3'- -UCCGGCGGUaCGa----GUCC-CGGuGCCGC- -5'
33589 3' -63.7 NC_007605.1 + 122525 0.66 0.579648
Target:  5'- uGGCCcguuguagGCCAgGgUCuGGGCCACGuGCu -3'
miRNA:   3'- uCCGG--------CGGUaCgAGuCCCGGUGC-CGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.