miRNA display CGI


Results 1 - 20 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33589 3' -63.7 NC_007605.1 + 170119 0.69 0.399928
Target:  5'- gGGGuCCGCgG-GCUCcgGGGGCUGCgGGCGg -3'
miRNA:   3'- -UCC-GGCGgUaCGAG--UCCCGGUG-CCGC- -5'
33589 3' -63.7 NC_007605.1 + 133984 0.7 0.345843
Target:  5'- cGGCCGCgcugaaCGUGCcCGGGGCgGCGGg- -3'
miRNA:   3'- uCCGGCG------GUACGaGUCCCGgUGCCgc -5'
33589 3' -63.7 NC_007605.1 + 54451 0.7 0.35324
Target:  5'- cGGCCGCCGUccugGCgcgaaagAGGGCCcCGGCc -3'
miRNA:   3'- uCCGGCGGUA----CGag-----UCCCGGuGCCGc -5'
33589 3' -63.7 NC_007605.1 + 170642 0.7 0.368367
Target:  5'- gGGGuCCGCgG-GCUcCGGGGCUGCgGGCGg -3'
miRNA:   3'- -UCC-GGCGgUaCGA-GUCCCGGUG-CCGC- -5'
33589 3' -63.7 NC_007605.1 + 159793 0.7 0.376095
Target:  5'- cAGGCC-CCccGCacCAGGGCCA-GGCGa -3'
miRNA:   3'- -UCCGGcGGuaCGa-GUCCCGGUgCCGC- -5'
33589 3' -63.7 NC_007605.1 + 63047 0.69 0.391877
Target:  5'- cGGCgGCCGUcugGCgcgCAGGGCUGCuGGCc -3'
miRNA:   3'- uCCGgCGGUA---CGa--GUCCCGGUG-CCGc -5'
33589 3' -63.7 NC_007605.1 + 3163 0.69 0.391877
Target:  5'- cGGGCUcggagaaaugggGCCG-GC-CAGGGCCACGGg- -3'
miRNA:   3'- -UCCGG------------CGGUaCGaGUCCCGGUGCCgc -5'
33589 3' -63.7 NC_007605.1 + 50337 0.69 0.399928
Target:  5'- cGGCgGagAUGCagccgacggCGGGGCCGCGGUGg -3'
miRNA:   3'- uCCGgCggUACGa--------GUCCCGGUGCCGC- -5'
33589 3' -63.7 NC_007605.1 + 169582 0.69 0.399928
Target:  5'- gGGGuCCGCgG-GCUCcgGGGGCUGCgGGCGg -3'
miRNA:   3'- -UCC-GGCGgUaCGAG--UCCCGGUG-CCGC- -5'
33589 3' -63.7 NC_007605.1 + 151324 0.7 0.338557
Target:  5'- cGGCCGCCAgacaCUgaAGGGCagaguuCACGGCGg -3'
miRNA:   3'- uCCGGCGGUac--GAg-UCCCG------GUGCCGC- -5'
33589 3' -63.7 NC_007605.1 + 3036 0.7 0.331384
Target:  5'- cGGCC-CCGUGCaUCucGGGCUACGcGCGc -3'
miRNA:   3'- uCCGGcGGUACG-AGu-CCCGGUGC-CGC- -5'
33589 3' -63.7 NC_007605.1 + 159718 0.7 0.331384
Target:  5'- aAGaGCCGCUccGUggcccCGGGaGCCACGGCGu -3'
miRNA:   3'- -UC-CGGCGGuaCGa----GUCC-CGGUGCCGC- -5'
33589 3' -63.7 NC_007605.1 + 104518 0.75 0.158622
Target:  5'- gGGGCUGagaCCAUGCUCAGuGGCCGucUGGCa -3'
miRNA:   3'- -UCCGGC---GGUACGAGUC-CCGGU--GCCGc -5'
33589 3' -63.7 NC_007605.1 + 58058 0.75 0.170534
Target:  5'- gGGGCCGCgGagGC-CGGGGCCGCGGa- -3'
miRNA:   3'- -UCCGGCGgUa-CGaGUCCCGGUGCCgc -5'
33589 3' -63.7 NC_007605.1 + 58088 0.75 0.170534
Target:  5'- gGGGCCGCgGagGC-CGGGGCCGCGGa- -3'
miRNA:   3'- -UCCGGCGgUa-CGaGUCCCGGUGCCgc -5'
33589 3' -63.7 NC_007605.1 + 49476 0.73 0.221273
Target:  5'- cAGGCCGCCGcauccGCUgggacCGGGGCCuuGGCa -3'
miRNA:   3'- -UCCGGCGGUa----CGA-----GUCCCGGugCCGc -5'
33589 3' -63.7 NC_007605.1 + 58133 0.72 0.265828
Target:  5'- gGGGCCGCagagGC-CGGGGCCGCagaGGCc -3'
miRNA:   3'- -UCCGGCGgua-CGaGUCCCGGUG---CCGc -5'
33589 3' -63.7 NC_007605.1 + 60278 0.72 0.284322
Target:  5'- uGGCCgugucgGCCGUGgC-CAGGGCCcaccugGCGGCGg -3'
miRNA:   3'- uCCGG------CGGUAC-GaGUCCCGG------UGCCGC- -5'
33589 3' -63.7 NC_007605.1 + 53831 0.71 0.290708
Target:  5'- cGGCCGC--UGC-CcGGGCCAgGGCGg -3'
miRNA:   3'- uCCGGCGguACGaGuCCCGGUgCCGC- -5'
33589 3' -63.7 NC_007605.1 + 61524 0.71 0.327134
Target:  5'- uAGGCCGCCcgggccacacgggcgAagcgGCUCguGGGGCuCGCGGUGg -3'
miRNA:   3'- -UCCGGCGG---------------Ua---CGAG--UCCCG-GUGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.