Results 81 - 100 of 178 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33589 | 3' | -63.7 | NC_007605.1 | + | 140201 | 0.71 | 0.324324 |
Target: 5'- gGGGCCGCCcggGCUgcCGGGGUCccucCGGCu -3' miRNA: 3'- -UCCGGCGGua-CGA--GUCCCGGu---GCCGc -5' |
|||||||
33589 | 3' | -63.7 | NC_007605.1 | + | 29886 | 0.71 | 0.303817 |
Target: 5'- cGGCCGCCccccgaGCUcCAGGGCCGgaaccccggaccCGGCu -3' miRNA: 3'- uCCGGCGGua----CGA-GUCCCGGU------------GCCGc -5' |
|||||||
33589 | 3' | -63.7 | NC_007605.1 | + | 29784 | 0.71 | 0.303817 |
Target: 5'- cGGCCGCCccccgaGCUcCAGGGCCGgaaccccggaccCGGCu -3' miRNA: 3'- uCCGGCGGua----CGA-GUCCCGGU------------GCCGc -5' |
|||||||
33589 | 3' | -63.7 | NC_007605.1 | + | 168940 | 0.77 | 0.127276 |
Target: 5'- cGGGCCGCCGcccuggcaucUGCUcCGGGGCCgguGGCGg -3' miRNA: 3'- -UCCGGCGGU----------ACGA-GUCCCGGug-CCGC- -5' |
|||||||
33589 | 3' | -63.7 | NC_007605.1 | + | 118245 | 0.76 | 0.147466 |
Target: 5'- gAGGCUGCCAggggccuggcGCUUGGGGCCuCGGCu -3' miRNA: 3'- -UCCGGCGGUa---------CGAGUCCCGGuGCCGc -5' |
|||||||
33589 | 3' | -63.7 | NC_007605.1 | + | 8843 | 0.74 | 0.205793 |
Target: 5'- cGGCCGCCAgucccaugUGCUCGcucugcgagggccGGGCCcCGGCc -3' miRNA: 3'- uCCGGCGGU--------ACGAGU-------------CCCGGuGCCGc -5' |
|||||||
33589 | 3' | -63.7 | NC_007605.1 | + | 10897 | 0.73 | 0.242701 |
Target: 5'- gGGGCgGCgAUG-UCGGGGCUgcugGCGGCGg -3' miRNA: 3'- -UCCGgCGgUACgAGUCCCGG----UGCCGC- -5' |
|||||||
33589 | 3' | -63.7 | NC_007605.1 | + | 30905 | 0.71 | 0.297206 |
Target: 5'- cGGCCGCCccccgaGCUcCAGGGCCGgaaccccgaccCGGCu -3' miRNA: 3'- uCCGGCGGua----CGA-GUCCCGGU-----------GCCGc -5' |
|||||||
33589 | 3' | -63.7 | NC_007605.1 | + | 28561 | 0.71 | 0.303817 |
Target: 5'- cGGCCGCCccccgaGCUcCAGGGCCGgaaccccggaccCGGCu -3' miRNA: 3'- uCCGGCGGua----CGA-GUCCCGGU------------GCCGc -5' |
|||||||
33589 | 3' | -63.7 | NC_007605.1 | + | 28663 | 0.71 | 0.303817 |
Target: 5'- cGGCCGCCccccgaGCUcCAGGGCCGgaaccccggaccCGGCu -3' miRNA: 3'- uCCGGCGGua----CGA-GUCCCGGU------------GCCGc -5' |
|||||||
33589 | 3' | -63.7 | NC_007605.1 | + | 28765 | 0.71 | 0.303817 |
Target: 5'- cGGCCGCCccccgaGCUcCAGGGCCGgaaccccggaccCGGCu -3' miRNA: 3'- uCCGGCGGua----CGA-GUCCCGGU------------GCCGc -5' |
|||||||
33589 | 3' | -63.7 | NC_007605.1 | + | 28867 | 0.71 | 0.303817 |
Target: 5'- cGGCCGCCccccgaGCUcCAGGGCCGgaaccccggaccCGGCu -3' miRNA: 3'- uCCGGCGGua----CGA-GUCCCGGU------------GCCGc -5' |
|||||||
33589 | 3' | -63.7 | NC_007605.1 | + | 28968 | 0.71 | 0.303817 |
Target: 5'- cGGCCGCCccccgaGCUcCAGGGCCGgaaccccggaccCGGCu -3' miRNA: 3'- uCCGGCGGua----CGA-GUCCCGGU------------GCCGc -5' |
|||||||
33589 | 3' | -63.7 | NC_007605.1 | + | 29070 | 0.71 | 0.303817 |
Target: 5'- cGGCCGCCccccgaGCUcCAGGGCCGgaaccccggaccCGGCu -3' miRNA: 3'- uCCGGCGGua----CGA-GUCCCGGU------------GCCGc -5' |
|||||||
33589 | 3' | -63.7 | NC_007605.1 | + | 29172 | 0.71 | 0.303817 |
Target: 5'- cGGCCGCCccccgaGCUcCAGGGCCGgaaccccggaccCGGCu -3' miRNA: 3'- uCCGGCGGua----CGA-GUCCCGGU------------GCCGc -5' |
|||||||
33589 | 3' | -63.7 | NC_007605.1 | + | 29274 | 0.71 | 0.303817 |
Target: 5'- cGGCCGCCccccgaGCUcCAGGGCCGgaaccccggaccCGGCu -3' miRNA: 3'- uCCGGCGGua----CGA-GUCCCGGU------------GCCGc -5' |
|||||||
33589 | 3' | -63.7 | NC_007605.1 | + | 29376 | 0.71 | 0.303817 |
Target: 5'- cGGCCGCCccccgaGCUcCAGGGCCGgaaccccggaccCGGCu -3' miRNA: 3'- uCCGGCGGua----CGA-GUCCCGGU------------GCCGc -5' |
|||||||
33589 | 3' | -63.7 | NC_007605.1 | + | 29478 | 0.71 | 0.303817 |
Target: 5'- cGGCCGCCccccgaGCUcCAGGGCCGgaaccccggaccCGGCu -3' miRNA: 3'- uCCGGCGGua----CGA-GUCCCGGU------------GCCGc -5' |
|||||||
33589 | 3' | -63.7 | NC_007605.1 | + | 29580 | 0.71 | 0.303817 |
Target: 5'- cGGCCGCCccccgaGCUcCAGGGCCGgaaccccggaccCGGCu -3' miRNA: 3'- uCCGGCGGua----CGA-GUCCCGGU------------GCCGc -5' |
|||||||
33589 | 3' | -63.7 | NC_007605.1 | + | 29682 | 0.71 | 0.303817 |
Target: 5'- cGGCCGCCccccgaGCUcCAGGGCCGgaaccccggaccCGGCu -3' miRNA: 3'- uCCGGCGGua----CGA-GUCCCGGU------------GCCGc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home