Results 121 - 140 of 178 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33589 | 3' | -63.7 | NC_007605.1 | + | 29784 | 0.71 | 0.303817 |
Target: 5'- cGGCCGCCccccgaGCUcCAGGGCCGgaaccccggaccCGGCu -3' miRNA: 3'- uCCGGCGGua----CGA-GUCCCGGU------------GCCGc -5' |
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33589 | 3' | -63.7 | NC_007605.1 | + | 29886 | 0.71 | 0.303817 |
Target: 5'- cGGCCGCCccccgaGCUcCAGGGCCGgaaccccggaccCGGCu -3' miRNA: 3'- uCCGGCGGua----CGA-GUCCCGGU------------GCCGc -5' |
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33589 | 3' | -63.7 | NC_007605.1 | + | 29987 | 0.71 | 0.303817 |
Target: 5'- cGGCCGCCccccgaGCUcCAGGGCCGgaaccccggaccCGGCu -3' miRNA: 3'- uCCGGCGGua----CGA-GUCCCGGU------------GCCGc -5' |
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33589 | 3' | -63.7 | NC_007605.1 | + | 55848 | 0.7 | 0.331384 |
Target: 5'- aGGGuCUGCCGcguguuugcUGCUCGGGGCaugcugccCGGCGg -3' miRNA: 3'- -UCC-GGCGGU---------ACGAGUCCCGgu------GCCGC- -5' |
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33589 | 3' | -63.7 | NC_007605.1 | + | 158615 | 0.71 | 0.324324 |
Target: 5'- gGGGCCGCCcggGCUgcCGGGGUCccucCGGCu -3' miRNA: 3'- -UCCGGCGGua-CGA--GUCCCGGu---GCCGc -5' |
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33589 | 3' | -63.7 | NC_007605.1 | + | 155546 | 0.71 | 0.324324 |
Target: 5'- gGGGCCGCCcggGCUgcCGGGGUCccucCGGCu -3' miRNA: 3'- -UCCGGCGGua-CGA--GUCCCGGu---GCCGc -5' |
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33589 | 3' | -63.7 | NC_007605.1 | + | 152477 | 0.71 | 0.324324 |
Target: 5'- gGGGCCGCCcggGCUgcCGGGGUCccucCGGCu -3' miRNA: 3'- -UCCGGCGGua-CGA--GUCCCGGu---GCCGc -5' |
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33589 | 3' | -63.7 | NC_007605.1 | + | 149408 | 0.71 | 0.324324 |
Target: 5'- gGGGCCGCCcggGCUgcCGGGGUCccucCGGCu -3' miRNA: 3'- -UCCGGCGGua-CGA--GUCCCGGu---GCCGc -5' |
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33589 | 3' | -63.7 | NC_007605.1 | + | 146339 | 0.71 | 0.324324 |
Target: 5'- gGGGCCGCCcggGCUgcCGGGGUCccucCGGCu -3' miRNA: 3'- -UCCGGCGGua-CGA--GUCCCGGu---GCCGc -5' |
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33589 | 3' | -63.7 | NC_007605.1 | + | 143270 | 0.71 | 0.324324 |
Target: 5'- gGGGCCGCCcggGCUgcCGGGGUCccucCGGCu -3' miRNA: 3'- -UCCGGCGGua-CGA--GUCCCGGu---GCCGc -5' |
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33589 | 3' | -63.7 | NC_007605.1 | + | 140201 | 0.71 | 0.324324 |
Target: 5'- gGGGCCGCCcggGCUgcCGGGGUCccucCGGCu -3' miRNA: 3'- -UCCGGCGGua-CGA--GUCCCGGu---GCCGc -5' |
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33589 | 3' | -63.7 | NC_007605.1 | + | 137132 | 0.71 | 0.324324 |
Target: 5'- gGGGCCGCCcggGCUgcCGGGGUCccucCGGCu -3' miRNA: 3'- -UCCGGCGGua-CGA--GUCCCGGu---GCCGc -5' |
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33589 | 3' | -63.7 | NC_007605.1 | + | 30803 | 0.71 | 0.303817 |
Target: 5'- cGGCCGCCccccgaGCUcCAGGGCCGgaaccccggaccCGGCu -3' miRNA: 3'- uCCGGCGGua----CGA-GUCCCGGU------------GCCGc -5' |
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33589 | 3' | -63.7 | NC_007605.1 | + | 30701 | 0.71 | 0.303817 |
Target: 5'- cGGCCGCCccccgaGCUcCAGGGCCGgaaccccggaccCGGCu -3' miRNA: 3'- uCCGGCGGua----CGA-GUCCCGGU------------GCCGc -5' |
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33589 | 3' | -63.7 | NC_007605.1 | + | 30599 | 0.71 | 0.303817 |
Target: 5'- cGGCCGCCccccgaGCUcCAGGGCCGgaaccccggaccCGGCu -3' miRNA: 3'- uCCGGCGGua----CGA-GUCCCGGU------------GCCGc -5' |
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33589 | 3' | -63.7 | NC_007605.1 | + | 30497 | 0.71 | 0.303817 |
Target: 5'- cGGCCGCCccccgaGCUcCAGGGCCGgaaccccggaccCGGCu -3' miRNA: 3'- uCCGGCGGua----CGA-GUCCCGGU------------GCCGc -5' |
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33589 | 3' | -63.7 | NC_007605.1 | + | 30395 | 0.71 | 0.303817 |
Target: 5'- cGGCCGCCccccgaGCUcCAGGGCCGgaaccccggaccCGGCu -3' miRNA: 3'- uCCGGCGGua----CGA-GUCCCGGU------------GCCGc -5' |
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33589 | 3' | -63.7 | NC_007605.1 | + | 30293 | 0.71 | 0.303817 |
Target: 5'- cGGCCGCCccccgaGCUcCAGGGCCGgaaccccggaccCGGCu -3' miRNA: 3'- uCCGGCGGua----CGA-GUCCCGGU------------GCCGc -5' |
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33589 | 3' | -63.7 | NC_007605.1 | + | 30191 | 0.71 | 0.303817 |
Target: 5'- cGGCCGCCccccgaGCUcCAGGGCCGgaaccccggaccCGGCu -3' miRNA: 3'- uCCGGCGGua----CGA-GUCCCGGU------------GCCGc -5' |
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33589 | 3' | -63.7 | NC_007605.1 | + | 30089 | 0.71 | 0.303817 |
Target: 5'- cGGCCGCCccccgaGCUcCAGGGCCGgaaccccggaccCGGCu -3' miRNA: 3'- uCCGGCGGua----CGA-GUCCCGGU------------GCCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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