miRNA display CGI


Results 41 - 60 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33589 3' -63.7 NC_007605.1 + 149408 0.71 0.324324
Target:  5'- gGGGCCGCCcggGCUgcCGGGGUCccucCGGCu -3'
miRNA:   3'- -UCCGGCGGua-CGA--GUCCCGGu---GCCGc -5'
33589 3' -63.7 NC_007605.1 + 29682 0.71 0.303817
Target:  5'- cGGCCGCCccccgaGCUcCAGGGCCGgaaccccggaccCGGCu -3'
miRNA:   3'- uCCGGCGGua----CGA-GUCCCGGU------------GCCGc -5'
33589 3' -63.7 NC_007605.1 + 118245 0.76 0.147466
Target:  5'- gAGGCUGCCAggggccuggcGCUUGGGGCCuCGGCu -3'
miRNA:   3'- -UCCGGCGGUa---------CGAGUCCCGGuGCCGc -5'
33589 3' -63.7 NC_007605.1 + 146339 0.71 0.324324
Target:  5'- gGGGCCGCCcggGCUgcCGGGGUCccucCGGCu -3'
miRNA:   3'- -UCCGGCGGua-CGA--GUCCCGGu---GCCGc -5'
33589 3' -63.7 NC_007605.1 + 168940 0.77 0.127276
Target:  5'- cGGGCCGCCGcccuggcaucUGCUcCGGGGCCgguGGCGg -3'
miRNA:   3'- -UCCGGCGGU----------ACGA-GUCCCGGug-CCGC- -5'
33589 3' -63.7 NC_007605.1 + 11902 0.68 0.44172
Target:  5'- ---aCGCCGUgGCUCccGGGGCCACGGa- -3'
miRNA:   3'- uccgGCGGUA-CGAG--UCCCGGUGCCgc -5'
33589 3' -63.7 NC_007605.1 + 10897 0.73 0.242701
Target:  5'- gGGGCgGCgAUG-UCGGGGCUgcugGCGGCGg -3'
miRNA:   3'- -UCCGgCGgUACgAGUCCCGG----UGCCGC- -5'
33589 3' -63.7 NC_007605.1 + 1035 0.68 0.440001
Target:  5'- uAGcGCCGCUcuGUGCgggggggcuggGGGGCCGCGGgGg -3'
miRNA:   3'- -UC-CGGCGG--UACGag---------UCCCGGUGCCgC- -5'
33589 3' -63.7 NC_007605.1 + 167217 0.69 0.383932
Target:  5'- -cGCUGCCcgGC-CAGGGCCAUcuccaccaGGCa -3'
miRNA:   3'- ucCGGCGGuaCGaGUCCCGGUG--------CCGc -5'
33589 3' -63.7 NC_007605.1 + 146604 0.69 0.383932
Target:  5'- gAGG-CGCCAgGCgCGGGGCCGguCGGCu -3'
miRNA:   3'- -UCCgGCGGUaCGaGUCCCGGU--GCCGc -5'
33589 3' -63.7 NC_007605.1 + 137397 0.69 0.383932
Target:  5'- gAGG-CGCCAgGCgCGGGGCCGguCGGCu -3'
miRNA:   3'- -UCCgGCGGUaCGaGUCCCGGU--GCCGc -5'
33589 3' -63.7 NC_007605.1 + 160383 0.7 0.33424
Target:  5'- gGGGCCGCCAauugGUuaAGGGCUACauuuuucaagucgugGGCGa -3'
miRNA:   3'- -UCCGGCGGUa---CGagUCCCGGUG---------------CCGC- -5'
33589 3' -63.7 NC_007605.1 + 155546 0.71 0.324324
Target:  5'- gGGGCCGCCcggGCUgcCGGGGUCccucCGGCu -3'
miRNA:   3'- -UCCGGCGGua-CGA--GUCCCGGu---GCCGc -5'
33589 3' -63.7 NC_007605.1 + 137132 0.71 0.324324
Target:  5'- gGGGCCGCCcggGCUgcCGGGGUCccucCGGCu -3'
miRNA:   3'- -UCCGGCGGua-CGA--GUCCCGGu---GCCGc -5'
33589 3' -63.7 NC_007605.1 + 30599 0.71 0.303817
Target:  5'- cGGCCGCCccccgaGCUcCAGGGCCGgaaccccggaccCGGCu -3'
miRNA:   3'- uCCGGCGGua----CGA-GUCCCGGU------------GCCGc -5'
33589 3' -63.7 NC_007605.1 + 30191 0.71 0.303817
Target:  5'- cGGCCGCCccccgaGCUcCAGGGCCGgaaccccggaccCGGCu -3'
miRNA:   3'- uCCGGCGGua----CGA-GUCCCGGU------------GCCGc -5'
33589 3' -63.7 NC_007605.1 + 29886 0.71 0.303817
Target:  5'- cGGCCGCCccccgaGCUcCAGGGCCGgaaccccggaccCGGCu -3'
miRNA:   3'- uCCGGCGGua----CGA-GUCCCGGU------------GCCGc -5'
33589 3' -63.7 NC_007605.1 + 29376 0.71 0.303817
Target:  5'- cGGCCGCCccccgaGCUcCAGGGCCGgaaccccggaccCGGCu -3'
miRNA:   3'- uCCGGCGGua----CGA-GUCCCGGU------------GCCGc -5'
33589 3' -63.7 NC_007605.1 + 29070 0.71 0.303817
Target:  5'- cGGCCGCCccccgaGCUcCAGGGCCGgaaccccggaccCGGCu -3'
miRNA:   3'- uCCGGCGGua----CGA-GUCCCGGU------------GCCGc -5'
33589 3' -63.7 NC_007605.1 + 28663 0.71 0.303817
Target:  5'- cGGCCGCCccccgaGCUcCAGGGCCGgaaccccggaccCGGCu -3'
miRNA:   3'- uCCGGCGGua----CGA-GUCCCGGU------------GCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.