Results 61 - 80 of 178 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33589 | 3' | -63.7 | NC_007605.1 | + | 55848 | 0.7 | 0.331384 |
Target: 5'- aGGGuCUGCCGcguguuugcUGCUCGGGGCaugcugccCGGCGg -3' miRNA: 3'- -UCC-GGCGGU---------ACGAGUCCCGgu------GCCGC- -5' |
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33589 | 3' | -63.7 | NC_007605.1 | + | 117795 | 0.7 | 0.360748 |
Target: 5'- gAGGCCGCCcugGCccgggCAGcGGCCgggaACGGCu -3' miRNA: 3'- -UCCGGCGGua-CGa----GUC-CCGG----UGCCGc -5' |
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33589 | 3' | -63.7 | NC_007605.1 | + | 30293 | 0.71 | 0.303817 |
Target: 5'- cGGCCGCCccccgaGCUcCAGGGCCGgaaccccggaccCGGCu -3' miRNA: 3'- uCCGGCGGua----CGA-GUCCCGGU------------GCCGc -5' |
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33589 | 3' | -63.7 | NC_007605.1 | + | 30395 | 0.71 | 0.303817 |
Target: 5'- cGGCCGCCccccgaGCUcCAGGGCCGgaaccccggaccCGGCu -3' miRNA: 3'- uCCGGCGGua----CGA-GUCCCGGU------------GCCGc -5' |
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33589 | 3' | -63.7 | NC_007605.1 | + | 30599 | 0.71 | 0.303817 |
Target: 5'- cGGCCGCCccccgaGCUcCAGGGCCGgaaccccggaccCGGCu -3' miRNA: 3'- uCCGGCGGua----CGA-GUCCCGGU------------GCCGc -5' |
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33589 | 3' | -63.7 | NC_007605.1 | + | 30701 | 0.71 | 0.303817 |
Target: 5'- cGGCCGCCccccgaGCUcCAGGGCCGgaaccccggaccCGGCu -3' miRNA: 3'- uCCGGCGGua----CGA-GUCCCGGU------------GCCGc -5' |
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33589 | 3' | -63.7 | NC_007605.1 | + | 140201 | 0.71 | 0.324324 |
Target: 5'- gGGGCCGCCcggGCUgcCGGGGUCccucCGGCu -3' miRNA: 3'- -UCCGGCGGua-CGA--GUCCCGGu---GCCGc -5' |
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33589 | 3' | -63.7 | NC_007605.1 | + | 143270 | 0.71 | 0.324324 |
Target: 5'- gGGGCCGCCcggGCUgcCGGGGUCccucCGGCu -3' miRNA: 3'- -UCCGGCGGua-CGA--GUCCCGGu---GCCGc -5' |
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33589 | 3' | -63.7 | NC_007605.1 | + | 149408 | 0.71 | 0.324324 |
Target: 5'- gGGGCCGCCcggGCUgcCGGGGUCccucCGGCu -3' miRNA: 3'- -UCCGGCGGua-CGA--GUCCCGGu---GCCGc -5' |
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33589 | 3' | -63.7 | NC_007605.1 | + | 152477 | 0.71 | 0.324324 |
Target: 5'- gGGGCCGCCcggGCUgcCGGGGUCccucCGGCu -3' miRNA: 3'- -UCCGGCGGua-CGA--GUCCCGGu---GCCGc -5' |
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33589 | 3' | -63.7 | NC_007605.1 | + | 55154 | 0.67 | 0.512426 |
Target: 5'- uGGCCuCCGUGUUUgccugcuGGGGCUGUGGCGa -3' miRNA: 3'- uCCGGcGGUACGAG-------UCCCGGUGCCGC- -5' |
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33589 | 3' | -63.7 | NC_007605.1 | + | 157887 | 0.67 | 0.494959 |
Target: 5'- uGGGCCGCCAgggggGCaaaaGGGGCUcuggaGGCa -3' miRNA: 3'- -UCCGGCGGUa----CGag--UCCCGGug---CCGc -5' |
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33589 | 3' | -63.7 | NC_007605.1 | + | 143535 | 0.69 | 0.383932 |
Target: 5'- gAGG-CGCCAgGCgCGGGGCCGguCGGCu -3' miRNA: 3'- -UCCgGCGGUaCGaGUCCCGGU--GCCGc -5' |
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33589 | 3' | -63.7 | NC_007605.1 | + | 152741 | 0.69 | 0.383932 |
Target: 5'- gAGG-CGCCAgGCgCGGGGCCGguCGGCu -3' miRNA: 3'- -UCCgGCGGUaCGaGUCCCGGU--GCCGc -5' |
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33589 | 3' | -63.7 | NC_007605.1 | + | 1035 | 0.68 | 0.440001 |
Target: 5'- uAGcGCCGCUcuGUGCgggggggcuggGGGGCCGCGGgGg -3' miRNA: 3'- -UC-CGGCGG--UACGag---------UCCCGGUGCCgC- -5' |
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33589 | 3' | -63.7 | NC_007605.1 | + | 11902 | 0.68 | 0.44172 |
Target: 5'- ---aCGCCGUgGCUCccGGGGCCACGGa- -3' miRNA: 3'- uccgGCGGUA-CGAG--UCCCGGUGCCgc -5' |
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33589 | 3' | -63.7 | NC_007605.1 | + | 143755 | 0.68 | 0.451243 |
Target: 5'- uAGGCCGaCCcucUGCcucccagacuuacccCAGGGCCAccCGGCGg -3' miRNA: 3'- -UCCGGC-GGu--ACGa--------------GUCCCGGU--GCCGC- -5' |
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33589 | 3' | -63.7 | NC_007605.1 | + | 152962 | 0.68 | 0.451243 |
Target: 5'- uAGGCCGaCCcucUGCcucccagacuuacccCAGGGCCAccCGGCGg -3' miRNA: 3'- -UCCGGC-GGu--ACGa--------------GUCCCGGU--GCCGC- -5' |
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33589 | 3' | -63.7 | NC_007605.1 | + | 109844 | 0.67 | 0.485875 |
Target: 5'- uGGCCGCuCGUGUgCAGgaGGCgGCGGgGa -3' miRNA: 3'- uCCGGCG-GUACGaGUC--CCGgUGCCgC- -5' |
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33589 | 3' | -63.7 | NC_007605.1 | + | 142543 | 0.67 | 0.494959 |
Target: 5'- uGGGCCGCCAgggggGCaaaaGGGGCUcuggaGGCa -3' miRNA: 3'- -UCCGGCGGUa----CGag--UCCCGGug---CCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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