miRNA display CGI


Results 81 - 100 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33589 3' -63.7 NC_007605.1 + 149893 0.68 0.451243
Target:  5'- uAGGCCGaCCcucUGCcucccagacuuacccCAGGGCCAccCGGCGg -3'
miRNA:   3'- -UCCGGC-GGu--ACGa--------------GUCCCGGU--GCCGC- -5'
33589 3' -63.7 NC_007605.1 + 159100 0.68 0.451243
Target:  5'- uAGGCCGaCCcucUGCcucccagacuuacccCAGGGCCAccCGGCGg -3'
miRNA:   3'- -UCCGGC-GGu--ACGa--------------GUCCCGGU--GCCGC- -5'
33589 3' -63.7 NC_007605.1 + 20518 0.68 0.459117
Target:  5'- cGGGCCGCCGagGggCA-GGCUGCGGCc -3'
miRNA:   3'- -UCCGGCGGUa-CgaGUcCCGGUGCCGc -5'
33589 3' -63.7 NC_007605.1 + 109844 0.67 0.485875
Target:  5'- uGGCCGCuCGUGUgCAGgaGGCgGCGGgGa -3'
miRNA:   3'- uCCGGCG-GUACGaGUC--CCGgUGCCgC- -5'
33589 3' -63.7 NC_007605.1 + 136405 0.67 0.494959
Target:  5'- uGGGCCGCCAgggggGCaaaaGGGGCUcuggaGGCa -3'
miRNA:   3'- -UCCGGCGGUa----CGag--UCCCGGug---CCGc -5'
33589 3' -63.7 NC_007605.1 + 154818 0.67 0.494959
Target:  5'- uGGGCCGCCAgggggGCaaaaGGGGCUcuggaGGCa -3'
miRNA:   3'- -UCCGGCGGUa----CGag--UCCCGGug---CCGc -5'
33589 3' -63.7 NC_007605.1 + 157887 0.67 0.494959
Target:  5'- uGGGCCGCCAgggggGCaaaaGGGGCUcuggaGGCa -3'
miRNA:   3'- -UCCGGCGGUa----CGag--UCCCGGug---CCGc -5'
33589 3' -63.7 NC_007605.1 + 1558 0.68 0.440001
Target:  5'- uAGcGCCGCUcuGUGCgggggggcuggGGGGCCGCGGgGg -3'
miRNA:   3'- -UC-CGGCGG--UACGag---------UCCCGGUGCCgC- -5'
33589 3' -63.7 NC_007605.1 + 1035 0.68 0.440001
Target:  5'- uAGcGCCGCUcuGUGCgggggggcuggGGGGCCGCGGgGg -3'
miRNA:   3'- -UC-CGGCGG--UACGag---------UCCCGGUGCCgC- -5'
33589 3' -63.7 NC_007605.1 + 168623 0.69 0.399928
Target:  5'- aGGGCCGagaaCA-GCUCgAGGGCCgucugcACGGCc -3'
miRNA:   3'- -UCCGGCg---GUaCGAG-UCCCGG------UGCCGc -5'
33589 3' -63.7 NC_007605.1 + 137749 0.67 0.541445
Target:  5'- cGGgCGCCuc-CUCGGGGCCAgcugcCGGgGg -3'
miRNA:   3'- uCCgGCGGuacGAGUCCCGGU-----GCCgC- -5'
33589 3' -63.7 NC_007605.1 + 153094 0.67 0.541445
Target:  5'- cGGgCGCCuc-CUCGGGGCCAgcugcCGGgGg -3'
miRNA:   3'- uCCgGCGGuacGAGUCCCGGU-----GCCgC- -5'
33589 3' -63.7 NC_007605.1 + 31006 0.66 0.550926
Target:  5'- cGGCCGCCcccgaGCUcCAGGG-CugGGUc -3'
miRNA:   3'- uCCGGCGGua---CGA-GUCCCgGugCCGc -5'
33589 3' -63.7 NC_007605.1 + 131971 0.66 0.559502
Target:  5'- cGGCCGCCcgGCUgcccccggagcgcCAGGaaccccggcuGCCccaggaccugGCGGCGg -3'
miRNA:   3'- uCCGGCGGuaCGA-------------GUCC----------CGG----------UGCCGC- -5'
33589 3' -63.7 NC_007605.1 + 132346 0.66 0.559502
Target:  5'- cGGCCGCCcgGCUgcccccggagcgcCAGGaaccccggcuGCCccaggaccugGCGGCGg -3'
miRNA:   3'- uCCGGCGGuaCGA-------------GUCC----------CGG----------UGCCGC- -5'
33589 3' -63.7 NC_007605.1 + 140466 0.69 0.383932
Target:  5'- gAGG-CGCCAgGCgCGGGGCCGguCGGCu -3'
miRNA:   3'- -UCCgGCGGUaCGaGUCCCGGU--GCCGc -5'
33589 3' -63.7 NC_007605.1 + 143535 0.69 0.383932
Target:  5'- gAGG-CGCCAgGCgCGGGGCCGguCGGCu -3'
miRNA:   3'- -UCCgGCGGUaCGaGUCCCGGU--GCCGc -5'
33589 3' -63.7 NC_007605.1 + 149673 0.69 0.383932
Target:  5'- gAGG-CGCCAgGCgCGGGGCCGguCGGCu -3'
miRNA:   3'- -UCCgGCGGUaCGaGUCCCGGU--GCCGc -5'
33589 3' -63.7 NC_007605.1 + 152741 0.69 0.383932
Target:  5'- gAGG-CGCCAgGCgCGGGGCCGguCGGCu -3'
miRNA:   3'- -UCCgGCGGUaCGaGUCCCGGU--GCCGc -5'
33589 3' -63.7 NC_007605.1 + 167217 0.69 0.383932
Target:  5'- -cGCUGCCcgGC-CAGGGCCAUcuccaccaGGCa -3'
miRNA:   3'- ucCGGCGGuaCGaGUCCCGGUG--------CCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.