miRNA display CGI


Results 101 - 120 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33589 3' -63.7 NC_007605.1 + 98314 0.66 0.589297
Target:  5'- cGGCCagGCCAccUGC-CGGGGCCAgUGGa- -3'
miRNA:   3'- uCCGG--CGGU--ACGaGUCCCGGU-GCCgc -5'
33589 3' -63.7 NC_007605.1 + 131353 0.66 0.597037
Target:  5'- cGGCCGCgguccuccccCGUGaacggggcgcgCuGGGCCGCGGCu -3'
miRNA:   3'- uCCGGCG----------GUACga---------GuCCCGGUGCCGc -5'
33589 3' -63.7 NC_007605.1 + 146956 0.67 0.541445
Target:  5'- cGGgCGCCuc-CUCGGGGCCAgcugcCGGgGg -3'
miRNA:   3'- uCCgGCGGuacGAGUCCCGGU-----GCCgC- -5'
33589 3' -63.7 NC_007605.1 + 143887 0.67 0.541445
Target:  5'- cGGgCGCCuc-CUCGGGGCCAgcugcCGGgGg -3'
miRNA:   3'- uCCgGCGGuacGAGUCCCGGU-----GCCgC- -5'
33589 3' -63.7 NC_007605.1 + 20518 0.68 0.459117
Target:  5'- cGGGCCGCCGagGggCA-GGCUGCGGCc -3'
miRNA:   3'- -UCCGGCGGUa-CgaGUcCCGGUGCCGc -5'
33589 3' -63.7 NC_007605.1 + 74798 0.68 0.476871
Target:  5'- gGGGCaCGUCAgGCUCAccaucuGGGCCACcuucuuGGUGg -3'
miRNA:   3'- -UCCG-GCGGUaCGAGU------CCCGGUG------CCGC- -5'
33589 3' -63.7 NC_007605.1 + 139474 0.67 0.494959
Target:  5'- uGGGCCGCCAgggggGCaaaaGGGGCUcuggaGGCa -3'
miRNA:   3'- -UCCGGCGGUa----CGag--UCCCGGug---CCGc -5'
33589 3' -63.7 NC_007605.1 + 142543 0.67 0.494959
Target:  5'- uGGGCCGCCAgggggGCaaaaGGGGCUcuggaGGCa -3'
miRNA:   3'- -UCCGGCGGUa----CGag--UCCCGGug---CCGc -5'
33589 3' -63.7 NC_007605.1 + 151749 0.67 0.494959
Target:  5'- uGGGCCGCCAgggggGCaaaaGGGGCUcuggaGGCa -3'
miRNA:   3'- -UCCGGCGGUa----CGag--UCCCGGug---CCGc -5'
33589 3' -63.7 NC_007605.1 + 154818 0.67 0.494959
Target:  5'- uGGGCCGCCAgggggGCaaaaGGGGCUcuggaGGCa -3'
miRNA:   3'- -UCCGGCGGUa----CGag--UCCCGGug---CCGc -5'
33589 3' -63.7 NC_007605.1 + 156163 0.67 0.541445
Target:  5'- cGGgCGCCuc-CUCGGGGCCAgcugcCGGgGg -3'
miRNA:   3'- uCCgGCGGuacGAGUCCCGGU-----GCCgC- -5'
33589 3' -63.7 NC_007605.1 + 109893 0.67 0.53202
Target:  5'- -aGCCGCCAU-CgagCAGguGGCCACGGUu -3'
miRNA:   3'- ucCGGCGGUAcGa--GUC--CCGGUGCCGc -5'
33589 3' -63.7 NC_007605.1 + 56289 0.67 0.522654
Target:  5'- cGGCCcuuuGCCugggGCUCagacuuAGGGCCGgGGCc -3'
miRNA:   3'- uCCGG----CGGua--CGAG------UCCCGGUgCCGc -5'
33589 3' -63.7 NC_007605.1 + 34253 0.67 0.513353
Target:  5'- uGGCUGgCggGCUgGGGGagGCGGCGc -3'
miRNA:   3'- uCCGGCgGuaCGAgUCCCggUGCCGC- -5'
33589 3' -63.7 NC_007605.1 + 55154 0.67 0.512426
Target:  5'- uGGCCuCCGUGUUUgccugcuGGGGCUGUGGCGa -3'
miRNA:   3'- uCCGGcGGUACGAG-------UCCCGGUGCCGC- -5'
33589 3' -63.7 NC_007605.1 + 47063 0.66 0.589297
Target:  5'- cAGGCCGCCAacgcccagaagGcCUCGcGGGUCAUGGa- -3'
miRNA:   3'- -UCCGGCGGUa----------C-GAGU-CCCGGUGCCgc -5'
33589 3' -63.7 NC_007605.1 + 39177 0.69 0.399928
Target:  5'- cGGCCGCCGgugGgUCcgcuGGGCCGCuGCc -3'
miRNA:   3'- uCCGGCGGUa--CgAGu---CCCGGUGcCGc -5'
33589 3' -63.7 NC_007605.1 + 149064 0.66 0.598974
Target:  5'- aAGGCCuggGCCAUGCUCuggccGGUCACGa-- -3'
miRNA:   3'- -UCCGG---CGGUACGAGuc---CCGGUGCcgc -5'
33589 3' -63.7 NC_007605.1 + 150767 0.66 0.596069
Target:  5'- gAGGCCGCgccagagcagagccCGggacUGaCUCAGGGCCAcauccccuCGGCc -3'
miRNA:   3'- -UCCGGCG--------------GU----AC-GAGUCCCGGU--------GCCGc -5'
33589 3' -63.7 NC_007605.1 + 76100 0.66 0.596069
Target:  5'- cAGGCCuCCAUGgUgaugaucuaacagaCAGGGaCgGCGGCGc -3'
miRNA:   3'- -UCCGGcGGUACgA--------------GUCCC-GgUGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.