miRNA display CGI


Results 1 - 20 of 231 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33591 3' -53.1 NC_007605.1 + 126181 0.66 0.985984
Target:  5'- gCCCGGcCCggcCAAGAGCgaaGACGAGg -3'
miRNA:   3'- gGGGCCuGGau-GUUUUCGgc-CUGUUC- -5'
33591 3' -53.1 NC_007605.1 + 150841 0.66 0.985984
Target:  5'- cCCCCGGGCCUuCAugGGCCc------ -3'
miRNA:   3'- -GGGGCCUGGAuGUuuUCGGccuguuc -5'
33591 3' -53.1 NC_007605.1 + 55157 0.66 0.985984
Target:  5'- cCUCCGuGuuuGCCUGCuGGGGCUGuGGCGAGu -3'
miRNA:   3'- -GGGGC-C---UGGAUGuUUUCGGC-CUGUUC- -5'
33591 3' -53.1 NC_007605.1 + 99149 0.66 0.985477
Target:  5'- aCCCGGgcACCUcCGAGGccgccggcucccgcGCCGGuCAGGg -3'
miRNA:   3'- gGGGCC--UGGAuGUUUU--------------CGGCCuGUUC- -5'
33591 3' -53.1 NC_007605.1 + 109429 0.66 0.984955
Target:  5'- cCCCUGGGCggCUGCAGGgcagggucagcccacGGCCgcGGACAu- -3'
miRNA:   3'- -GGGGCCUG--GAUGUUU---------------UCGG--CCUGUuc -5'
33591 3' -53.1 NC_007605.1 + 31474 0.66 0.984238
Target:  5'- uCCCCGGGCUU-CA-GAGCCcaGGAUg-- -3'
miRNA:   3'- -GGGGCCUGGAuGUuUUCGG--CCUGuuc -5'
33591 3' -53.1 NC_007605.1 + 98178 0.66 0.984238
Target:  5'- aCCCCgaugacGGACUcaUGCGGgccuGGGCCGGGCu-- -3'
miRNA:   3'- -GGGG------CCUGG--AUGUU----UUCGGCCUGuuc -5'
33591 3' -53.1 NC_007605.1 + 121441 0.66 0.984238
Target:  5'- gCCCGuccCCUugGAGAGuuGGACu-- -3'
miRNA:   3'- gGGGCcu-GGAugUUUUCggCCUGuuc -5'
33591 3' -53.1 NC_007605.1 + 25336 0.66 0.984238
Target:  5'- uCCCCGGGCUU-CA-GAGCCcaGGAUg-- -3'
miRNA:   3'- -GGGGCCUGGAuGUuUUCGG--CCUGuuc -5'
33591 3' -53.1 NC_007605.1 + 13060 0.66 0.984238
Target:  5'- uCCCCGGGCUU-CA-GAGCCcaGGAUg-- -3'
miRNA:   3'- -GGGGCCUGGAuGUuUUCGG--CCUGuuc -5'
33591 3' -53.1 NC_007605.1 + 22267 0.66 0.984238
Target:  5'- uCCCCGGGCUU-CA-GAGCCcaGGAUg-- -3'
miRNA:   3'- -GGGGCCUGGAuGUuUUCGG--CCUGuuc -5'
33591 3' -53.1 NC_007605.1 + 28405 0.66 0.984238
Target:  5'- uCCCCGGGCUU-CA-GAGCCcaGGAUg-- -3'
miRNA:   3'- -GGGGCCUGGAuGUuUUCGG--CCUGuuc -5'
33591 3' -53.1 NC_007605.1 + 16129 0.66 0.984238
Target:  5'- uCCCCGGGCUU-CA-GAGCCcaGGAUg-- -3'
miRNA:   3'- -GGGGCCUGGAuGUuUUCGG--CCUGuuc -5'
33591 3' -53.1 NC_007605.1 + 19198 0.66 0.984238
Target:  5'- uCCCCGGGCUU-CA-GAGCCcaGGAUg-- -3'
miRNA:   3'- -GGGGCCUGGAuGUuUUCGG--CCUGuuc -5'
33591 3' -53.1 NC_007605.1 + 34543 0.66 0.984238
Target:  5'- uCCCCGGGCUU-CA-GAGCCcaGGAUg-- -3'
miRNA:   3'- -GGGGCCUGGAuGUuUUCGG--CCUGuuc -5'
33591 3' -53.1 NC_007605.1 + 29907 0.66 0.982331
Target:  5'- gCCCUGGACCaACcc-GGCcCGGGCc-- -3'
miRNA:   3'- -GGGGCCUGGaUGuuuUCG-GCCUGuuc -5'
33591 3' -53.1 NC_007605.1 + 17631 0.66 0.982331
Target:  5'- gCCCUGGACCaACcc-GGCcCGGGCc-- -3'
miRNA:   3'- -GGGGCCUGGaUGuuuUCG-GCCUGuuc -5'
33591 3' -53.1 NC_007605.1 + 20700 0.66 0.982331
Target:  5'- gCCCUGGACCaACcc-GGCcCGGGCc-- -3'
miRNA:   3'- -GGGGCCUGGaUGuuuUCG-GCCUGuuc -5'
33591 3' -53.1 NC_007605.1 + 23769 0.66 0.982331
Target:  5'- gCCCUGGACCaACcc-GGCcCGGGCc-- -3'
miRNA:   3'- -GGGGCCUGGaUGuuuUCG-GCCUGuuc -5'
33591 3' -53.1 NC_007605.1 + 156220 0.66 0.982331
Target:  5'- uCCCUGGcuGCCUGCAAugcucuGCUGGcCAc- -3'
miRNA:   3'- -GGGGCC--UGGAUGUUuu----CGGCCuGUuc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.