miRNA display CGI


Results 21 - 40 of 231 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33591 3' -53.1 NC_007605.1 + 17631 0.66 0.982331
Target:  5'- gCCCUGGACCaACcc-GGCcCGGGCc-- -3'
miRNA:   3'- -GGGGCCUGGaUGuuuUCG-GCCUGuuc -5'
33591 3' -53.1 NC_007605.1 + 14562 0.66 0.982331
Target:  5'- gCCCUGGACCaACcc-GGCcCGGGCc-- -3'
miRNA:   3'- -GGGGCCUGGaUGuuuUCG-GCCUGuuc -5'
33591 3' -53.1 NC_007605.1 + 156220 0.66 0.982331
Target:  5'- uCCCUGGcuGCCUGCAAugcucuGCUGGcCAc- -3'
miRNA:   3'- -GGGGCC--UGGAUGUUuu----CGGCCuGUuc -5'
33591 3' -53.1 NC_007605.1 + 73318 0.66 0.982331
Target:  5'- gCCCCGGcaggugGCCU-----GGCCGGcCAAGc -3'
miRNA:   3'- -GGGGCC------UGGAuguuuUCGGCCuGUUC- -5'
33591 3' -53.1 NC_007605.1 + 108671 0.66 0.982331
Target:  5'- cCCCCGGGaaaUAUuuAGAcGCCGGGCcGGa -3'
miRNA:   3'- -GGGGCCUgg-AUG--UUUuCGGCCUGuUC- -5'
33591 3' -53.1 NC_007605.1 + 67897 0.66 0.982331
Target:  5'- aUCCGGGCCUugAcguGGGCcCGGAgGu- -3'
miRNA:   3'- gGGGCCUGGAugUu--UUCG-GCCUgUuc -5'
33591 3' -53.1 NC_007605.1 + 165744 0.66 0.980256
Target:  5'- uCCCCGGggacACCUGCAcGAGacccCUGGGCu-- -3'
miRNA:   3'- -GGGGCC----UGGAUGUuUUC----GGCCUGuuc -5'
33591 3' -53.1 NC_007605.1 + 112342 0.66 0.980256
Target:  5'- gCUCCGGGCCUcguGCcAGGGCCuguuguccuGGGgGAGg -3'
miRNA:   3'- -GGGGCCUGGA---UGuUUUCGG---------CCUgUUC- -5'
33591 3' -53.1 NC_007605.1 + 2328 0.66 0.980256
Target:  5'- -gCCGGGCCagagaccgcugACAcGAGGCCGGACc-- -3'
miRNA:   3'- ggGGCCUGGa----------UGU-UUUCGGCCUGuuc -5'
33591 3' -53.1 NC_007605.1 + 4394 0.66 0.979599
Target:  5'- gCCUGGugACCUGCcuGguggagauggcccuGGCCGGGCAGc -3'
miRNA:   3'- gGGGCC--UGGAUGuuU--------------UCGGCCUGUUc -5'
33591 3' -53.1 NC_007605.1 + 16058 0.66 0.978004
Target:  5'- uCCCCGGGuCCcagGCc--AGCCGGAgGGa -3'
miRNA:   3'- -GGGGCCU-GGa--UGuuuUCGGCCUgUUc -5'
33591 3' -53.1 NC_007605.1 + 104593 0.66 0.978004
Target:  5'- gCCCCGGACCcGCA---GCaGGGCu-- -3'
miRNA:   3'- -GGGGCCUGGaUGUuuuCGgCCUGuuc -5'
33591 3' -53.1 NC_007605.1 + 103938 0.66 0.978004
Target:  5'- gCCCGGccguGCCUGCGuuGGCCacGGCGGc -3'
miRNA:   3'- gGGGCC----UGGAUGUuuUCGGc-CUGUUc -5'
33591 3' -53.1 NC_007605.1 + 19127 0.66 0.978004
Target:  5'- uCCCCGGGuCCcagGCc--AGCCGGAgGGa -3'
miRNA:   3'- -GGGGCCU-GGa--UGuuuUCGGCCUgUUc -5'
33591 3' -53.1 NC_007605.1 + 63352 0.66 0.978004
Target:  5'- gCCCaGGACCUu----GGCCGGugGc- -3'
miRNA:   3'- gGGG-CCUGGAuguuuUCGGCCugUuc -5'
33591 3' -53.1 NC_007605.1 + 22196 0.66 0.978004
Target:  5'- uCCCCGGGuCCcagGCc--AGCCGGAgGGa -3'
miRNA:   3'- -GGGGCCU-GGa--UGuuuUCGGCCUgUUc -5'
33591 3' -53.1 NC_007605.1 + 12989 0.66 0.978004
Target:  5'- uCCCCGGGuCCcagGCc--AGCCGGAgGGa -3'
miRNA:   3'- -GGGGCCU-GGa--UGuuuUCGGCCUgUUc -5'
33591 3' -53.1 NC_007605.1 + 28334 0.66 0.978004
Target:  5'- uCCCCGGGuCCcagGCc--AGCCGGAgGGa -3'
miRNA:   3'- -GGGGCCU-GGa--UGuuuUCGGCCUgUUc -5'
33591 3' -53.1 NC_007605.1 + 34472 0.66 0.978004
Target:  5'- uCCCCGGGuCCcagGCc--AGCCGGAgGGa -3'
miRNA:   3'- -GGGGCCU-GGa--UGuuuUCGGCCUgUUc -5'
33591 3' -53.1 NC_007605.1 + 31403 0.66 0.978004
Target:  5'- uCCCCGGGuCCcagGCc--AGCCGGAgGGa -3'
miRNA:   3'- -GGGGCCU-GGa--UGuuuUCGGCCUgUUc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.