miRNA display CGI


Results 1 - 20 of 520 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33591 5' -62 NC_007605.1 + 99219 0.65 0.707775
Target:  5'- cAGCCCcaguucagcaauCCACCaaagacaagGGUCcCCAUAGACCUa -3'
miRNA:   3'- -UCGGGu-----------GGUGG---------CCGGaGGUGUCUGGG- -5'
33591 5' -62 NC_007605.1 + 84456 0.65 0.706822
Target:  5'- cGGCCCACUgaguguccagGCuCGGCUggagCCAUggcaaccuuugccuGGGCCCc -3'
miRNA:   3'- -UCGGGUGG----------UG-GCCGGa---GGUG--------------UCUGGG- -5'
33591 5' -62 NC_007605.1 + 99153 0.65 0.706822
Target:  5'- gGGCaCCuccgagGCCGCCGGCUcCCGCgccggucaggggacGGGCCUc -3'
miRNA:   3'- -UCG-GG------UGGUGGCCGGaGGUG--------------UCUGGG- -5'
33591 5' -62 NC_007605.1 + 124976 0.66 0.70396
Target:  5'- uGCCCcuggagaacacaugcGCC-CCGGagcaucucuccaCUUCCAgAGACCCa -3'
miRNA:   3'- uCGGG---------------UGGuGGCC------------GGAGGUgUCUGGG- -5'
33591 5' -62 NC_007605.1 + 23767 0.66 0.700136
Target:  5'- aGGCCCuggACCAacCCGGCC----CGGGCCCc -3'
miRNA:   3'- -UCGGG---UGGU--GGCCGGagguGUCUGGG- -5'
33591 5' -62 NC_007605.1 + 39669 0.66 0.700136
Target:  5'- cAGCCgggcgGCCGCCGGUgggUCCGCuGGGCCg -3'
miRNA:   3'- -UCGGg----UGGUGGCCGg--AGGUG-UCUGGg -5'
33591 5' -62 NC_007605.1 + 62158 0.66 0.700136
Target:  5'- cAGCuCCACgGCCauGGCCuugaugUCCGCGgccgugggcuGACCCu -3'
miRNA:   3'- -UCG-GGUGgUGG--CCGG------AGGUGU----------CUGGG- -5'
33591 5' -62 NC_007605.1 + 29905 0.66 0.700136
Target:  5'- aGGCCCuggACCAacCCGGCC----CGGGCCCc -3'
miRNA:   3'- -UCGGG---UGGU--GGCCGGagguGUCUGGG- -5'
33591 5' -62 NC_007605.1 + 32973 0.66 0.700136
Target:  5'- aGGCCCuggACCAacCCGGCC----CGGGCCCc -3'
miRNA:   3'- -UCGGG---UGGU--GGCCGGagguGUCUGGG- -5'
33591 5' -62 NC_007605.1 + 14560 0.66 0.700136
Target:  5'- aGGCCCuggACCAacCCGGCC----CGGGCCCc -3'
miRNA:   3'- -UCGGG---UGGU--GGCCGGagguGUCUGGG- -5'
33591 5' -62 NC_007605.1 + 39544 0.66 0.700136
Target:  5'- cAGCCgggcgGCCGCCGGUgggUCCGCuGGGCCg -3'
miRNA:   3'- -UCGGg----UGGUGGCCGg--AGGUG-UCUGGg -5'
33591 5' -62 NC_007605.1 + 17629 0.66 0.700136
Target:  5'- aGGCCCuggACCAacCCGGCC----CGGGCCCc -3'
miRNA:   3'- -UCGGG---UGGU--GGCCGGagguGUCUGGG- -5'
33591 5' -62 NC_007605.1 + 20698 0.66 0.700136
Target:  5'- aGGCCCuggACCAacCCGGCC----CGGGCCCc -3'
miRNA:   3'- -UCGGG---UGGU--GGCCGGagguGUCUGGG- -5'
33591 5' -62 NC_007605.1 + 38795 0.66 0.700136
Target:  5'- cAGCCgggcgGCCGCCGGUgggUCCGCuGGGCCg -3'
miRNA:   3'- -UCGGg----UGGUGGCCGg--AGGUG-UCUGGg -5'
33591 5' -62 NC_007605.1 + 39169 0.66 0.700136
Target:  5'- cAGCCgggcgGCCGCCGGUgggUCCGCuGGGCCg -3'
miRNA:   3'- -UCGGg----UGGUGGCCGg--AGGUG-UCUGGg -5'
33591 5' -62 NC_007605.1 + 38545 0.66 0.700136
Target:  5'- cAGCCgggcgGCCGCCGGUgggUCCGCuGGGCCg -3'
miRNA:   3'- -UCGGg----UGGUGGCCGg--AGGUG-UCUGGg -5'
33591 5' -62 NC_007605.1 + 26836 0.66 0.700136
Target:  5'- aGGCCCuggACCAacCCGGCC----CGGGCCCc -3'
miRNA:   3'- -UCGGG---UGGU--GGCCGGagguGUCUGGG- -5'
33591 5' -62 NC_007605.1 + 38670 0.66 0.700136
Target:  5'- cAGCCgggcgGCCGCCGGUgggUCCGCuGGGCCg -3'
miRNA:   3'- -UCGGg----UGGUGGCCGg--AGGUG-UCUGGg -5'
33591 5' -62 NC_007605.1 + 39044 0.66 0.700136
Target:  5'- cAGCCgggcgGCCGCCGGUgggUCCGCuGGGCCg -3'
miRNA:   3'- -UCGGg----UGGUGGCCGg--AGGUG-UCUGGg -5'
33591 5' -62 NC_007605.1 + 39294 0.66 0.700136
Target:  5'- cAGCCgggcgGCCGCCGGUgggUCCGCuGGGCCg -3'
miRNA:   3'- -UCGGg----UGGUGGCCGg--AGGUG-UCUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.