miRNA display CGI


Results 1 - 20 of 520 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33591 5' -62 NC_007605.1 + 99219 0.65 0.707775
Target:  5'- cAGCCCcaguucagcaauCCACCaaagacaagGGUCcCCAUAGACCUa -3'
miRNA:   3'- -UCGGGu-----------GGUGG---------CCGGaGGUGUCUGGG- -5'
33591 5' -62 NC_007605.1 + 99153 0.65 0.706822
Target:  5'- gGGCaCCuccgagGCCGCCGGCUcCCGCgccggucaggggacGGGCCUc -3'
miRNA:   3'- -UCG-GG------UGGUGGCCGGaGGUG--------------UCUGGG- -5'
33591 5' -62 NC_007605.1 + 84456 0.65 0.706822
Target:  5'- cGGCCCACUgaguguccagGCuCGGCUggagCCAUggcaaccuuugccuGGGCCCc -3'
miRNA:   3'- -UCGGGUGG----------UG-GCCGGa---GGUG--------------UCUGGG- -5'
33591 5' -62 NC_007605.1 + 51949 0.66 0.671229
Target:  5'- gGGCCgACCGaggaaGGCCgccgCCACGGccGCCUc -3'
miRNA:   3'- -UCGGgUGGUgg---CCGGa---GGUGUC--UGGG- -5'
33591 5' -62 NC_007605.1 + 19713 0.66 0.6518
Target:  5'- cAGCCUcguCCACC--CCUCCccacgguggACAGGCCCu -3'
miRNA:   3'- -UCGGGu--GGUGGccGGAGG---------UGUCUGGG- -5'
33591 5' -62 NC_007605.1 + 124976 0.66 0.70396
Target:  5'- uGCCCcuggagaacacaugcGCC-CCGGagcaucucuccaCUUCCAgAGACCCa -3'
miRNA:   3'- uCGGG---------------UGGuGGCC------------GGAGGUgUCUGGG- -5'
33591 5' -62 NC_007605.1 + 134816 0.66 0.6518
Target:  5'- cAGgCCGCCAUgcucagggccaCGGCgUgCCAgAGGCCCu -3'
miRNA:   3'- -UCgGGUGGUG-----------GCCGgA-GGUgUCUGGG- -5'
33591 5' -62 NC_007605.1 + 61183 0.66 0.671229
Target:  5'- gGGCcgCCGCCACCGcuGCCgUCCACu-GCCUu -3'
miRNA:   3'- -UCG--GGUGGUGGC--CGG-AGGUGucUGGG- -5'
33591 5' -62 NC_007605.1 + 87983 0.66 0.6518
Target:  5'- -cCCCAguCCACCGGCCguaaaCCuCAGugCUu -3'
miRNA:   3'- ucGGGU--GGUGGCCGGa----GGuGUCugGG- -5'
33591 5' -62 NC_007605.1 + 25851 0.66 0.6518
Target:  5'- cAGCCUcguCCACC--CCUCCccacgguggACAGGCCCu -3'
miRNA:   3'- -UCGGGu--GGUGGccGGAGG---------UGUCUGGG- -5'
33591 5' -62 NC_007605.1 + 35057 0.66 0.6518
Target:  5'- cAGCCUcguCCACC--CCUCCccacgguggACAGGCCCu -3'
miRNA:   3'- -UCGGGu--GGUGGccGGAGG---------UGUCUGGG- -5'
33591 5' -62 NC_007605.1 + 137074 0.66 0.6518
Target:  5'- aAGCCCACUgugUGGCCgagUCCAC-GAUCCc -3'
miRNA:   3'- -UCGGGUGGug-GCCGG---AGGUGuCUGGG- -5'
33591 5' -62 NC_007605.1 + 22782 0.66 0.6518
Target:  5'- cAGCCUcguCCACC--CCUCCccacgguggACAGGCCCu -3'
miRNA:   3'- -UCGGGu--GGUGGccGGAGG---------UGUCUGGG- -5'
33591 5' -62 NC_007605.1 + 2770 0.66 0.661525
Target:  5'- uGCCgGucgUgGCCGGCUUCUACAGgACCa -3'
miRNA:   3'- uCGGgU---GgUGGCCGGAGGUGUC-UGGg -5'
33591 5' -62 NC_007605.1 + 65487 0.66 0.6518
Target:  5'- -cCCCACUuaugauuCCagggauauGGCCUCCAUGGGCCUc -3'
miRNA:   3'- ucGGGUGGu------GG--------CCGGAGGUGUCUGGG- -5'
33591 5' -62 NC_007605.1 + 60299 0.66 0.668321
Target:  5'- gGGCCCACCuggcGgCGGCgUCC-CGGcacacauccuggauGCCCu -3'
miRNA:   3'- -UCGGGUGG----UgGCCGgAGGuGUC--------------UGGG- -5'
33591 5' -62 NC_007605.1 + 106378 0.66 0.671229
Target:  5'- gAGCCCcCCGCUGcGCCUgagcucCCGCu--CCCa -3'
miRNA:   3'- -UCGGGuGGUGGC-CGGA------GGUGucuGGG- -5'
33591 5' -62 NC_007605.1 + 108680 0.66 0.6518
Target:  5'- cAGCaCCGCCACgGGaauCUCCACcgAGGCguCCa -3'
miRNA:   3'- -UCG-GGUGGUGgCCg--GAGGUG--UCUG--GG- -5'
33591 5' -62 NC_007605.1 + 69182 0.66 0.65861
Target:  5'- uGGCCugCACCAUCuuugcccuguccguGGUCUCCA-GGGCCCu -3'
miRNA:   3'- -UCGG--GUGGUGG--------------CCGGAGGUgUCUGGG- -5'
33591 5' -62 NC_007605.1 + 3024 0.66 0.67026
Target:  5'- cGGCCCugUAcCCGGCC-CCGugcaucuCGGGCUa -3'
miRNA:   3'- -UCGGGugGU-GGCCGGaGGU-------GUCUGGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.