miRNA display CGI


Results 1 - 20 of 520 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33591 5' -62 NC_007605.1 + 136248 1.11 0.000667
Target:  5'- gAGCCCACCACCGGCCUCCACAGACCCa -3'
miRNA:   3'- -UCGGGUGGUGGCCGGAGGUGUCUGGG- -5'
33591 5' -62 NC_007605.1 + 113499 0.83 0.064862
Target:  5'- cGGCCCcggccucugcgGCC-CCGGCCUCCGCGGcCCCg -3'
miRNA:   3'- -UCGGG-----------UGGuGGCCGGAGGUGUCuGGG- -5'
33591 5' -62 NC_007605.1 + 113544 0.83 0.064862
Target:  5'- cGGCCCcggccuccgcgGCC-CCGGCCUCCGCGGcCCCg -3'
miRNA:   3'- -UCGGG-----------UGGuGGCCGGAGGUGUCuGGG- -5'
33591 5' -62 NC_007605.1 + 34184 0.82 0.083696
Target:  5'- aGGCUCACCACCacaGGCCcCC-CAGACCCg -3'
miRNA:   3'- -UCGGGUGGUGG---CCGGaGGuGUCUGGG- -5'
33591 5' -62 NC_007605.1 + 31115 0.82 0.083696
Target:  5'- aGGCUCACCACCacaGGCCcCC-CAGACCCg -3'
miRNA:   3'- -UCGGGUGGUGG---CCGGaGGuGUCUGGG- -5'
33591 5' -62 NC_007605.1 + 28046 0.82 0.083696
Target:  5'- aGGCUCACCACCacaGGCCcCC-CAGACCCg -3'
miRNA:   3'- -UCGGGUGGUGG---CCGGaGGuGUCUGGG- -5'
33591 5' -62 NC_007605.1 + 24977 0.82 0.083696
Target:  5'- aGGCUCACCACCacaGGCCcCC-CAGACCCg -3'
miRNA:   3'- -UCGGGUGGUGG---CCGGaGGuGUCUGGG- -5'
33591 5' -62 NC_007605.1 + 21909 0.82 0.083696
Target:  5'- aGGCUCACCACCacaGGCCcCC-CAGACCCg -3'
miRNA:   3'- -UCGGGUGGUGG---CCGGaGGuGUCUGGG- -5'
33591 5' -62 NC_007605.1 + 18840 0.82 0.083696
Target:  5'- aGGCUCACCACCacaGGCCcCC-CAGACCCg -3'
miRNA:   3'- -UCGGGUGGUGG---CCGGaGGuGUCUGGG- -5'
33591 5' -62 NC_007605.1 + 15771 0.82 0.083696
Target:  5'- aGGCUCACCACCacaGGCCcCC-CAGACCCg -3'
miRNA:   3'- -UCGGGUGGUGG---CCGGaGGuGUCUGGG- -5'
33591 5' -62 NC_007605.1 + 12702 0.82 0.083696
Target:  5'- aGGCUCACCACCacaGGCCcCC-CAGACCCg -3'
miRNA:   3'- -UCGGGUGGUGG---CCGGaGGuGUCUGGG- -5'
33591 5' -62 NC_007605.1 + 137688 0.79 0.128154
Target:  5'- aGGCUCGCCACCccaGaCCUCC-CAGACCCg -3'
miRNA:   3'- -UCGGGUGGUGGc--C-GGAGGuGUCUGGG- -5'
33591 5' -62 NC_007605.1 + 143825 0.79 0.128154
Target:  5'- aGGCUCGCCACCccaGaCCUCC-CAGACCCg -3'
miRNA:   3'- -UCGGGUGGUGGc--C-GGAGGuGUCUGGG- -5'
33591 5' -62 NC_007605.1 + 149963 0.79 0.128154
Target:  5'- aGGCUCGCCACCccaGaCCUCC-CAGACCCg -3'
miRNA:   3'- -UCGGGUGGUGGc--C-GGAGGuGUCUGGG- -5'
33591 5' -62 NC_007605.1 + 146894 0.79 0.128154
Target:  5'- aGGCUCGCCACCccaGaCCUCC-CAGACCCg -3'
miRNA:   3'- -UCGGGUGGUGGc--C-GGAGGuGUCUGGG- -5'
33591 5' -62 NC_007605.1 + 153032 0.79 0.128154
Target:  5'- aGGCUCGCCACCccaGaCCUCC-CAGACCCg -3'
miRNA:   3'- -UCGGGUGGUGGc--C-GGAGGuGUCUGGG- -5'
33591 5' -62 NC_007605.1 + 156101 0.79 0.128154
Target:  5'- aGGCUCGCCACCccaGaCCUCC-CAGACCCg -3'
miRNA:   3'- -UCGGGUGGUGGc--C-GGAGGuGUCUGGG- -5'
33591 5' -62 NC_007605.1 + 159170 0.79 0.128154
Target:  5'- aGGCUCGCCACCccaGaCCUCC-CAGACCCg -3'
miRNA:   3'- -UCGGGUGGUGGc--C-GGAGGuGUCUGGG- -5'
33591 5' -62 NC_007605.1 + 140756 0.79 0.128154
Target:  5'- aGGCUCGCCACCccaGaCCUCC-CAGACCCg -3'
miRNA:   3'- -UCGGGUGGUGGc--C-GGAGGuGUCUGGG- -5'
33591 5' -62 NC_007605.1 + 159771 0.79 0.131359
Target:  5'- uGCCC-CCGCCaGcGCCUCCucGCAGGCCCc -3'
miRNA:   3'- uCGGGuGGUGG-C-CGGAGG--UGUCUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.