miRNA display CGI


Results 21 - 40 of 520 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33591 5' -62 NC_007605.1 + 100287 0.66 0.700136
Target:  5'- cGCCCAgaGCCccaagGGCCcCCAgGGugCCu -3'
miRNA:   3'- uCGGGUggUGG-----CCGGaGGUgUCugGG- -5'
33591 5' -62 NC_007605.1 + 14560 0.66 0.700136
Target:  5'- aGGCCCuggACCAacCCGGCC----CGGGCCCc -3'
miRNA:   3'- -UCGGG---UGGU--GGCCGGagguGUCUGGG- -5'
33591 5' -62 NC_007605.1 + 38670 0.66 0.700136
Target:  5'- cAGCCgggcgGCCGCCGGUgggUCCGCuGGGCCg -3'
miRNA:   3'- -UCGGg----UGGUGGCCGg--AGGUG-UCUGGg -5'
33591 5' -62 NC_007605.1 + 39294 0.66 0.700136
Target:  5'- cAGCCgggcgGCCGCCGGUgggUCCGCuGGGCCg -3'
miRNA:   3'- -UCGGg----UGGUGGCCGg--AGGUG-UCUGGg -5'
33591 5' -62 NC_007605.1 + 29905 0.66 0.700136
Target:  5'- aGGCCCuggACCAacCCGGCC----CGGGCCCc -3'
miRNA:   3'- -UCGGG---UGGU--GGCCGGagguGUCUGGG- -5'
33591 5' -62 NC_007605.1 + 39169 0.66 0.700136
Target:  5'- cAGCCgggcgGCCGCCGGUgggUCCGCuGGGCCg -3'
miRNA:   3'- -UCGGg----UGGUGGCCGg--AGGUG-UCUGGg -5'
33591 5' -62 NC_007605.1 + 38545 0.66 0.700136
Target:  5'- cAGCCgggcgGCCGCCGGUgggUCCGCuGGGCCg -3'
miRNA:   3'- -UCGGg----UGGUGGCCGg--AGGUG-UCUGGg -5'
33591 5' -62 NC_007605.1 + 47671 0.66 0.697263
Target:  5'- aGGCCCccagcuucugaggcGgCugUGGCCUCUACgccAGGCUCg -3'
miRNA:   3'- -UCGGG--------------UgGugGCCGGAGGUG---UCUGGG- -5'
33591 5' -62 NC_007605.1 + 54475 0.66 0.690542
Target:  5'- gGGCCC-CgGCCGcuuCCUCCGCuccucGCCCu -3'
miRNA:   3'- -UCGGGuGgUGGCc--GGAGGUGuc---UGGG- -5'
33591 5' -62 NC_007605.1 + 99283 0.66 0.690542
Target:  5'- aGGCCCagcuccacGCCGCCccCCUCCACcuucaAGuCCCa -3'
miRNA:   3'- -UCGGG--------UGGUGGccGGAGGUG-----UCuGGG- -5'
33591 5' -62 NC_007605.1 + 167901 0.66 0.690542
Target:  5'- gAGCC--CCACCgGGCCUggUC-CAGACCUg -3'
miRNA:   3'- -UCGGguGGUGG-CCGGA--GGuGUCUGGG- -5'
33591 5' -62 NC_007605.1 + 17686 0.66 0.690542
Target:  5'- aGGCCCugaGCC-CC-GCCaacCUGCAGGCCCu -3'
miRNA:   3'- -UCGGG---UGGuGGcCGGa--GGUGUCUGGG- -5'
33591 5' -62 NC_007605.1 + 135553 0.66 0.68958
Target:  5'- cGcCCCACCcaaggacGCCuGCCUUCACcuGGAUCCc -3'
miRNA:   3'- uC-GGGUGG-------UGGcCGGAGGUG--UCUGGG- -5'
33591 5' -62 NC_007605.1 + 75138 0.66 0.687655
Target:  5'- uGCCCACCcCCGuccuugcaccGCCUCCcguggugcgGCAGccggagcacucuggGCCCa -3'
miRNA:   3'- uCGGGUGGuGGC----------CGGAGG---------UGUC--------------UGGG- -5'
33591 5' -62 NC_007605.1 + 19390 0.66 0.684764
Target:  5'- cGCuCCACCcuagaccccagcuuCUGGCCUCCcCGGGUCCa -3'
miRNA:   3'- uCG-GGUGGu-------------GGCCGGAGGuGUCUGGG- -5'
33591 5' -62 NC_007605.1 + 16321 0.66 0.684764
Target:  5'- cGCuCCACCcuagaccccagcuuCUGGCCUCCcCGGGUCCa -3'
miRNA:   3'- uCG-GGUGGu-------------GGCCGGAGGuGUCUGGG- -5'
33591 5' -62 NC_007605.1 + 31666 0.66 0.684764
Target:  5'- cGCuCCACCcuagaccccagcuuCUGGCCUCCcCGGGUCCa -3'
miRNA:   3'- uCG-GGUGGu-------------GGCCGGAGGuGUCUGGG- -5'
33591 5' -62 NC_007605.1 + 28597 0.66 0.684764
Target:  5'- cGCuCCACCcuagaccccagcuuCUGGCCUCCcCGGGUCCa -3'
miRNA:   3'- uCG-GGUGGu-------------GGCCGGAGGuGUCUGGG- -5'
33591 5' -62 NC_007605.1 + 22459 0.66 0.684764
Target:  5'- cGCuCCACCcuagaccccagcuuCUGGCCUCCcCGGGUCCa -3'
miRNA:   3'- uCG-GGUGGu-------------GGCCGGAGGuGUCUGGG- -5'
33591 5' -62 NC_007605.1 + 25528 0.66 0.684764
Target:  5'- cGCuCCACCcuagaccccagcuuCUGGCCUCCcCGGGUCCa -3'
miRNA:   3'- uCG-GGUGGu-------------GGCCGGAGGuGUCUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.