miRNA display CGI


Results 1 - 20 of 520 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33591 5' -62 NC_007605.1 + 24188 0.74 0.267886
Target:  5'- aGGCCCccuCCGuccCCGuCCUCCAgAGACCCg -3'
miRNA:   3'- -UCGGGu--GGU---GGCcGGAGGUgUCUGGG- -5'
33591 5' -62 NC_007605.1 + 164151 0.76 0.189052
Target:  5'- uGCCCaagguaucGCC-CCGGCCUCC-CAGuCCCa -3'
miRNA:   3'- uCGGG--------UGGuGGCCGGAGGuGUCuGGG- -5'
33591 5' -62 NC_007605.1 + 159984 0.75 0.222955
Target:  5'- cGCCCccucuGCCuCCGGCCgCCcCGGGCCCg -3'
miRNA:   3'- uCGGG-----UGGuGGCCGGaGGuGUCUGGG- -5'
33591 5' -62 NC_007605.1 + 61273 0.75 0.2282
Target:  5'- gGGCCUGCCACaggCGGCUguaGCGGACCCa -3'
miRNA:   3'- -UCGGGUGGUG---GCCGGaggUGUCUGGG- -5'
33591 5' -62 NC_007605.1 + 134314 0.75 0.2282
Target:  5'- gGGCCCACUACgugaGGCCcacgguggCgGCAGACCCc -3'
miRNA:   3'- -UCGGGUGGUGg---CCGGa-------GgUGUCUGGG- -5'
33591 5' -62 NC_007605.1 + 108271 0.74 0.256008
Target:  5'- cAGUCCacaGCCACCGGCCaaggUCCugGGccuCCCa -3'
miRNA:   3'- -UCGGG---UGGUGGCCGG----AGGugUCu--GGG- -5'
33591 5' -62 NC_007605.1 + 14981 0.74 0.267886
Target:  5'- aGGCCCccuCCGuccCCGuCCUCCAgAGACCCg -3'
miRNA:   3'- -UCGGGu--GGU---GGCcGGAGGUgUCUGGG- -5'
33591 5' -62 NC_007605.1 + 18050 0.74 0.267886
Target:  5'- aGGCCCccuCCGuccCCGuCCUCCAgAGACCCg -3'
miRNA:   3'- -UCGGGu--GGU---GGCcGGAGGUgUCUGGG- -5'
33591 5' -62 NC_007605.1 + 21119 0.74 0.267886
Target:  5'- aGGCCCccuCCGuccCCGuCCUCCAgAGACCCg -3'
miRNA:   3'- -UCGGGu--GGU---GGCcGGAGGUgUCUGGG- -5'
33591 5' -62 NC_007605.1 + 61994 0.77 0.16769
Target:  5'- uGUCCcCCGCUGGCCUCCGCGuacacGCCCa -3'
miRNA:   3'- uCGGGuGGUGGCCGGAGGUGUc----UGGG- -5'
33591 5' -62 NC_007605.1 + 150816 0.77 0.15938
Target:  5'- cGGCCCgcggacGCCGCCucgccagcccccgGGCCUUCAUGGGCCCg -3'
miRNA:   3'- -UCGGG------UGGUGG-------------CCGGAGGUGUCUGGG- -5'
33591 5' -62 NC_007605.1 + 159771 0.79 0.131359
Target:  5'- uGCCC-CCGCCaGcGCCUCCucGCAGGCCCc -3'
miRNA:   3'- uCGGGuGGUGG-C-CGGAGG--UGUCUGGG- -5'
33591 5' -62 NC_007605.1 + 12702 0.82 0.083696
Target:  5'- aGGCUCACCACCacaGGCCcCC-CAGACCCg -3'
miRNA:   3'- -UCGGGUGGUGG---CCGGaGGuGUCUGGG- -5'
33591 5' -62 NC_007605.1 + 15771 0.82 0.083696
Target:  5'- aGGCUCACCACCacaGGCCcCC-CAGACCCg -3'
miRNA:   3'- -UCGGGUGGUGG---CCGGaGGuGUCUGGG- -5'
33591 5' -62 NC_007605.1 + 18840 0.82 0.083696
Target:  5'- aGGCUCACCACCacaGGCCcCC-CAGACCCg -3'
miRNA:   3'- -UCGGGUGGUGG---CCGGaGGuGUCUGGG- -5'
33591 5' -62 NC_007605.1 + 21909 0.82 0.083696
Target:  5'- aGGCUCACCACCacaGGCCcCC-CAGACCCg -3'
miRNA:   3'- -UCGGGUGGUGG---CCGGaGGuGUCUGGG- -5'
33591 5' -62 NC_007605.1 + 24977 0.82 0.083696
Target:  5'- aGGCUCACCACCacaGGCCcCC-CAGACCCg -3'
miRNA:   3'- -UCGGGUGGUGG---CCGGaGGuGUCUGGG- -5'
33591 5' -62 NC_007605.1 + 28046 0.82 0.083696
Target:  5'- aGGCUCACCACCacaGGCCcCC-CAGACCCg -3'
miRNA:   3'- -UCGGGUGGUGG---CCGGaGGuGUCUGGG- -5'
33591 5' -62 NC_007605.1 + 31115 0.82 0.083696
Target:  5'- aGGCUCACCACCacaGGCCcCC-CAGACCCg -3'
miRNA:   3'- -UCGGGUGGUGG---CCGGaGGuGUCUGGG- -5'
33591 5' -62 NC_007605.1 + 34184 0.82 0.083696
Target:  5'- aGGCUCACCACCacaGGCCcCC-CAGACCCg -3'
miRNA:   3'- -UCGGGUGGUGG---CCGGaGGuGUCUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.