miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33594 3' -57.3 NC_007605.1 + 44361 0.66 0.85159
Target:  5'- aUGGGAUCUGucuacaccaUGuCUGGUGUGCc -3'
miRNA:   3'- cACCCUGGACuacg-----AC-GACCACACGa -5'
33594 3' -57.3 NC_007605.1 + 37896 0.67 0.811556
Target:  5'- -aGGGAgggGgcGCUGCUGGUGUGa- -3'
miRNA:   3'- caCCCUggaCuaCGACGACCACACga -5'
33594 3' -57.3 NC_007605.1 + 71412 0.67 0.793715
Target:  5'- cGUGGGAuCCggaGGUGaCUGCUGGgaugGaGCUg -3'
miRNA:   3'- -CACCCU-GGa--CUAC-GACGACCa---CaCGA- -5'
33594 3' -57.3 NC_007605.1 + 87199 0.68 0.765879
Target:  5'- -cGGGGCCaGGcucuUGCUGCgugGGUGgucGCUg -3'
miRNA:   3'- caCCCUGGaCU----ACGACGa--CCACa--CGA- -5'
33594 3' -57.3 NC_007605.1 + 52634 0.68 0.75635
Target:  5'- -aGGGuCCUGGcgagUGCUGUggUGGUGaUGCa -3'
miRNA:   3'- caCCCuGGACU----ACGACG--ACCAC-ACGa -5'
33594 3' -57.3 NC_007605.1 + 78048 0.68 0.75635
Target:  5'- gGUGGGGCUUGuuuuucccaagGUGggGCUGGUG-GCa -3'
miRNA:   3'- -CACCCUGGAC-----------UACgaCGACCACaCGa -5'
33594 3' -57.3 NC_007605.1 + 77985 0.68 0.75635
Target:  5'- gGUGGGGCUUGuuuuucccaagGUGggGCUGGUG-GCa -3'
miRNA:   3'- -CACCCUGGAC-----------UACgaCGACCACaCGa -5'
33594 3' -57.3 NC_007605.1 + 137566 0.68 0.74671
Target:  5'- aUGGGGCCUGugacUGgUGCUuguGGUGUGg- -3'
miRNA:   3'- cACCCUGGACu---ACgACGA---CCACACga -5'
33594 3' -57.3 NC_007605.1 + 77590 0.69 0.676932
Target:  5'- --aGGGCCUGAcGCUugGCUGGUGgUGCc -3'
miRNA:   3'- cacCCUGGACUaCGA--CGACCAC-ACGa -5'
33594 3' -57.3 NC_007605.1 + 44546 0.69 0.676932
Target:  5'- -cGGGAUCUGccggucGCUGUUGGcGUGCa -3'
miRNA:   3'- caCCCUGGACua----CGACGACCaCACGa -5'
33594 3' -57.3 NC_007605.1 + 2377 0.7 0.636047
Target:  5'- aGUGGGugUuuggUGGcaggGCUGCUGGUG-GCa -3'
miRNA:   3'- -CACCCugG----ACUa---CGACGACCACaCGa -5'
33594 3' -57.3 NC_007605.1 + 78387 0.7 0.625797
Target:  5'- aGUGGGGCCUG-UGCUuGCaGGUGcgGUg -3'
miRNA:   3'- -CACCCUGGACuACGA-CGaCCACa-CGa -5'
33594 3' -57.3 NC_007605.1 + 4390 0.7 0.615552
Target:  5'- -gGGGGCCUGGUGacCUGCcUGGUGgagaugGCc -3'
miRNA:   3'- caCCCUGGACUAC--GACG-ACCACa-----CGa -5'
33594 3' -57.3 NC_007605.1 + 51025 0.71 0.574772
Target:  5'- -aGGGACUUGAgggggGCUGUUGuG-GUGCUg -3'
miRNA:   3'- caCCCUGGACUa----CGACGAC-CaCACGA- -5'
33594 3' -57.3 NC_007605.1 + 134561 0.8 0.168659
Target:  5'- gGUGGcuGugCUGGUGCUGCUGGUGgugGCa -3'
miRNA:   3'- -CACC--CugGACUACGACGACCACa--CGa -5'
33594 3' -57.3 NC_007605.1 + 139084 1.08 0.002457
Target:  5'- gGUGGGACCUGAUGCUGCUGGUGUGCUg -3'
miRNA:   3'- -CACCCUGGACUACGACGACCACACGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.