miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33595 3' -49.3 NC_007605.1 + 147903 0.66 0.998659
Target:  5'- --cGGUGc----GGCUGCCCcgUGACc -3'
miRNA:   3'- guuCCACuuauaUCGACGGGuaGCUG- -5'
33595 3' -49.3 NC_007605.1 + 63297 0.66 0.998046
Target:  5'- --cGGccgGggUGUAGCcGCCCggGUCGAg -3'
miRNA:   3'- guuCCa--CuuAUAUCGaCGGG--UAGCUg -5'
33595 3' -49.3 NC_007605.1 + 120375 0.66 0.99766
Target:  5'- gAAGGUGGccccUGGCagGCCCAggGACu -3'
miRNA:   3'- gUUCCACUuau-AUCGa-CGGGUagCUG- -5'
33595 3' -49.3 NC_007605.1 + 77897 0.66 0.997213
Target:  5'- cUAAGGUGugguugGUGGCauuUGCCUGUgGACu -3'
miRNA:   3'- -GUUCCACuua---UAUCG---ACGGGUAgCUG- -5'
33595 3' -49.3 NC_007605.1 + 106504 0.67 0.99466
Target:  5'- aAAGGaUGAAgg-GGCUGCCgGccUUGACg -3'
miRNA:   3'- gUUCC-ACUUauaUCGACGGgU--AGCUG- -5'
33595 3' -49.3 NC_007605.1 + 48900 0.67 0.99466
Target:  5'- aCAGGaUGAG-AUGGCUGCCCAauuugUGGCc -3'
miRNA:   3'- -GUUCcACUUaUAUCGACGGGUa----GCUG- -5'
33595 3' -49.3 NC_007605.1 + 9535 0.69 0.985914
Target:  5'- cCAAGGUGGugcaugGGgaGCCCAccugCGACc -3'
miRNA:   3'- -GUUCCACUuaua--UCgaCGGGUa---GCUG- -5'
33595 3' -49.3 NC_007605.1 + 108832 0.69 0.977435
Target:  5'- aGAGGUGGAcggggGGCUcGCCCGcgUGACg -3'
miRNA:   3'- gUUCCACUUaua--UCGA-CGGGUa-GCUG- -5'
33595 3' -49.3 NC_007605.1 + 37730 0.7 0.968959
Target:  5'- -cGGGUGGAUAU-GCcGCCUGUCGGu -3'
miRNA:   3'- guUCCACUUAUAuCGaCGGGUAGCUg -5'
33595 3' -49.3 NC_007605.1 + 165481 0.7 0.968959
Target:  5'- -cGGG-GGAUAUggccAGCUGCCCcgUGGCc -3'
miRNA:   3'- guUCCaCUUAUA----UCGACGGGuaGCUG- -5'
33595 3' -49.3 NC_007605.1 + 59792 0.7 0.968959
Target:  5'- aAGGGUGAggAUAUAGCUccuCCCuUUGACg -3'
miRNA:   3'- gUUCCACU--UAUAUCGAc--GGGuAGCUG- -5'
33595 3' -49.3 NC_007605.1 + 119745 0.71 0.954432
Target:  5'- -uAGGUGggUGUGGCUcgGCUCAgguucCGGCc -3'
miRNA:   3'- guUCCACuuAUAUCGA--CGGGUa----GCUG- -5'
33595 3' -49.3 NC_007605.1 + 139535 1.11 0.009591
Target:  5'- uCAAGGUGAAUAUAGCUGCCCAUCGACg -3'
miRNA:   3'- -GUUCCACUUAUAUCGACGGGUAGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.