miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33595 5' -56.7 NC_007605.1 + 61456 0.66 0.843146
Target:  5'- cGGCgGGcguagagGGGCCGCUGgugCGCCg-- -3'
miRNA:   3'- uUUGgCCa------CCCGGCGACaa-GUGGauu -5'
33595 5' -56.7 NC_007605.1 + 157367 0.66 0.843146
Target:  5'- --cCCGG-GGGCCGUgggGggCACCg-- -3'
miRNA:   3'- uuuGGCCaCCCGGCGa--CaaGUGGauu -5'
33595 5' -56.7 NC_007605.1 + 82015 0.67 0.834878
Target:  5'- aGGGCgGGUGGcaGCCGCggccaUCACCUGGg -3'
miRNA:   3'- -UUUGgCCACC--CGGCGaca--AGUGGAUU- -5'
33595 5' -56.7 NC_007605.1 + 153546 0.67 0.834878
Target:  5'- aGGGCCGGUGGGagaggagGCUGgcCGCCUc- -3'
miRNA:   3'- -UUUGGCCACCCgg-----CGACaaGUGGAuu -5'
33595 5' -56.7 NC_007605.1 + 60089 0.67 0.8
Target:  5'- gGAACCGGUaGGCgaCGCUG--CGCCUGAg -3'
miRNA:   3'- -UUUGGCCAcCCG--GCGACaaGUGGAUU- -5'
33595 5' -56.7 NC_007605.1 + 8196 0.68 0.751041
Target:  5'- cAAGCUGGUGGaGCUGCUGgagaagcagaGCCUGc -3'
miRNA:   3'- -UUUGGCCACC-CGGCGACaag-------UGGAUu -5'
33595 5' -56.7 NC_007605.1 + 39681 0.73 0.470709
Target:  5'- -cGCCGGUGGGuCCGCUGggcCGCUg-- -3'
miRNA:   3'- uuUGGCCACCC-GGCGACaa-GUGGauu -5'
33595 5' -56.7 NC_007605.1 + 39556 0.73 0.470709
Target:  5'- -cGCCGGUGGGuCCGCUGggcCGCUg-- -3'
miRNA:   3'- uuUGGCCACCC-GGCGACaa-GUGGauu -5'
33595 5' -56.7 NC_007605.1 + 39431 0.73 0.470709
Target:  5'- -cGCCGGUGGGuCCGCUGggcCGCUg-- -3'
miRNA:   3'- uuUGGCCACCC-GGCGACaa-GUGGauu -5'
33595 5' -56.7 NC_007605.1 + 39306 0.73 0.470709
Target:  5'- -cGCCGGUGGGuCCGCUGggcCGCUg-- -3'
miRNA:   3'- uuUGGCCACCC-GGCGACaa-GUGGauu -5'
33595 5' -56.7 NC_007605.1 + 39181 0.73 0.470709
Target:  5'- -cGCCGGUGGGuCCGCUGggcCGCUg-- -3'
miRNA:   3'- uuUGGCCACCC-GGCGACaa-GUGGauu -5'
33595 5' -56.7 NC_007605.1 + 39056 0.73 0.470709
Target:  5'- -cGCCGGUGGGuCCGCUGggcCGCUg-- -3'
miRNA:   3'- uuUGGCCACCC-GGCGACaa-GUGGauu -5'
33595 5' -56.7 NC_007605.1 + 38931 0.73 0.470709
Target:  5'- -cGCCGGUGGGuCCGCUGggcCGCUg-- -3'
miRNA:   3'- uuUGGCCACCC-GGCGACaa-GUGGauu -5'
33595 5' -56.7 NC_007605.1 + 38807 0.73 0.470709
Target:  5'- -cGCCGGUGGGuCCGCUGggcCGCUg-- -3'
miRNA:   3'- uuUGGCCACCC-GGCGACaa-GUGGauu -5'
33595 5' -56.7 NC_007605.1 + 38682 0.73 0.470709
Target:  5'- -cGCCGGUGGGuCCGCUGggcCGCUg-- -3'
miRNA:   3'- uuUGGCCACCC-GGCGACaa-GUGGauu -5'
33595 5' -56.7 NC_007605.1 + 38557 0.73 0.470709
Target:  5'- -cGCCGGUGGGuCCGCUGggcCGCUg-- -3'
miRNA:   3'- uuUGGCCACCC-GGCGACaa-GUGGauu -5'
33595 5' -56.7 NC_007605.1 + 38432 0.73 0.470709
Target:  5'- -cGCCGGUGGGuCCGCUGggcCGCUg-- -3'
miRNA:   3'- uuUGGCCACCC-GGCGACaa-GUGGauu -5'
33595 5' -56.7 NC_007605.1 + 38307 0.73 0.470709
Target:  5'- -cGCCGGUGGGuCCGCUGggcCGCUg-- -3'
miRNA:   3'- uuUGGCCACCC-GGCGACaa-GUGGauu -5'
33595 5' -56.7 NC_007605.1 + 139571 1.04 0.004625
Target:  5'- gAAACCGGUGGGCCGCUGUUCACCUAAa -3'
miRNA:   3'- -UUUGGCCACCCGGCGACAAGUGGAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.