miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33596 3' -47.7 NC_007605.1 + 4513 0.66 0.999411
Target:  5'- ----gAGGUGGAggagcgcagcGUGGGUGagGUGCUg -3'
miRNA:   3'- uuaaaUCUAUCU----------CACCCACa-CACGAg -5'
33596 3' -47.7 NC_007605.1 + 40315 0.67 0.997998
Target:  5'- ----cGGcgGGGGUGGGggGUGcGCUCc -3'
miRNA:   3'- uuaaaUCuaUCUCACCCa-CACaCGAG- -5'
33596 3' -47.7 NC_007605.1 + 78379 0.67 0.997998
Target:  5'- ---gUGGAUAcAGUGGGgccUGUGCUUg -3'
miRNA:   3'- uuaaAUCUAUcUCACCCac-ACACGAG- -5'
33596 3' -47.7 NC_007605.1 + 5582 0.68 0.997596
Target:  5'- -----cGGUGGGGUGGGg--GUGUUCc -3'
miRNA:   3'- uuaaauCUAUCUCACCCacaCACGAG- -5'
33596 3' -47.7 NC_007605.1 + 78487 0.68 0.995251
Target:  5'- ----aAGGUAGGGgagGuGGUG-GUGCUCu -3'
miRNA:   3'- uuaaaUCUAUCUCa--C-CCACaCACGAG- -5'
33596 3' -47.7 NC_007605.1 + 156969 0.7 0.988554
Target:  5'- ----gAGAc-GGGUGGGUGUGUGUa- -3'
miRNA:   3'- uuaaaUCUauCUCACCCACACACGag -5'
33596 3' -47.7 NC_007605.1 + 153900 0.7 0.988554
Target:  5'- ----gAGAc-GGGUGGGUGUGUGUa- -3'
miRNA:   3'- uuaaaUCUauCUCACCCACACACGag -5'
33596 3' -47.7 NC_007605.1 + 150831 0.7 0.988554
Target:  5'- ----gAGAc-GGGUGGGUGUGUGUa- -3'
miRNA:   3'- uuaaaUCUauCUCACCCACACACGag -5'
33596 3' -47.7 NC_007605.1 + 147762 0.7 0.988554
Target:  5'- ----gAGAc-GGGUGGGUGUGUGUa- -3'
miRNA:   3'- uuaaaUCUauCUCACCCACACACGag -5'
33596 3' -47.7 NC_007605.1 + 141625 0.7 0.988554
Target:  5'- ----gAGAc-GGGUGGGUGUGUGUa- -3'
miRNA:   3'- uuaaaUCUauCUCACCCACACACGag -5'
33596 3' -47.7 NC_007605.1 + 138556 0.7 0.988554
Target:  5'- ----gAGAc-GGGUGGGUGUGUGUa- -3'
miRNA:   3'- uuaaaUCUauCUCACCCACACACGag -5'
33596 3' -47.7 NC_007605.1 + 119738 0.76 0.85528
Target:  5'- --aUUGGcAUAG-GUGGGUGUG-GCUCg -3'
miRNA:   3'- uuaAAUC-UAUCuCACCCACACaCGAG- -5'
33596 3' -47.7 NC_007605.1 + 139652 1.08 0.017937
Target:  5'- gAAUUUAGAUAGAGUGGGUGUGUGCUCu -3'
miRNA:   3'- -UUAAAUCUAUCUCACCCACACACGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.