Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33596 | 5' | -49.3 | NC_007605.1 | + | 103960 | 0.66 | 0.998954 |
Target: 5'- gCugGGUCGCCugACCCUCUugcacUCCAa-- -3' miRNA: 3'- gGuuCUAGUGG--UGGGAGAu----AGGUaua -5' |
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33596 | 5' | -49.3 | NC_007605.1 | + | 18512 | 0.66 | 0.998954 |
Target: 5'- uCCGGG---GCCGCCCUCUccGUCCu--- -3' miRNA: 3'- -GGUUCuagUGGUGGGAGA--UAGGuaua -5' |
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33596 | 5' | -49.3 | NC_007605.1 | + | 88356 | 0.66 | 0.998726 |
Target: 5'- aCCAGGAgcCGCCGCCCcCccaggcUCCAUAc -3' miRNA: 3'- -GGUUCUa-GUGGUGGGaGau----AGGUAUa -5' |
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33596 | 5' | -49.3 | NC_007605.1 | + | 125409 | 0.66 | 0.998701 |
Target: 5'- cCCAGGGUCAUCacauacaccgacuGCCCggguUCCAUAa -3' miRNA: 3'- -GGUUCUAGUGG-------------UGGGagauAGGUAUa -5' |
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33596 | 5' | -49.3 | NC_007605.1 | + | 19952 | 0.66 | 0.998275 |
Target: 5'- cCCGAGGguaggcccagcccccUC-CCGCCC-CUGUCCAc-- -3' miRNA: 3'- -GGUUCU---------------AGuGGUGGGaGAUAGGUaua -5' |
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33596 | 5' | -49.3 | NC_007605.1 | + | 17206 | 0.66 | 0.998143 |
Target: 5'- aCCAGGGg-GCCACCgUC-AUCCAg-- -3' miRNA: 3'- -GGUUCUagUGGUGGgAGaUAGGUaua -5' |
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33596 | 5' | -49.3 | NC_007605.1 | + | 16127 | 0.67 | 0.997351 |
Target: 5'- aCAAGAUCACC-CUCUCccAUCCc--- -3' miRNA: 3'- gGUUCUAGUGGuGGGAGa-UAGGuaua -5' |
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33596 | 5' | -49.3 | NC_007605.1 | + | 159970 | 0.67 | 0.996295 |
Target: 5'- uCCAGcgcucuGGUCGCC-CCCUCUGccUCCGg-- -3' miRNA: 3'- -GGUU------CUAGUGGuGGGAGAU--AGGUaua -5' |
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33596 | 5' | -49.3 | NC_007605.1 | + | 31971 | 0.68 | 0.994085 |
Target: 5'- aCAAGAgCACaCACCCacUCUAUCUAa-- -3' miRNA: 3'- gGUUCUaGUG-GUGGG--AGAUAGGUaua -5' |
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33596 | 5' | -49.3 | NC_007605.1 | + | 136070 | 0.68 | 0.994085 |
Target: 5'- gCCcGGAagACCACCCUCUGcCCc--- -3' miRNA: 3'- -GGuUCUagUGGUGGGAGAUaGGuaua -5' |
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33596 | 5' | -49.3 | NC_007605.1 | + | 132436 | 0.68 | 0.993148 |
Target: 5'- gCCAuGGAUC-CCACCCgggGUCUGUGUg -3' miRNA: 3'- -GGU-UCUAGuGGUGGGagaUAGGUAUA- -5' |
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33596 | 5' | -49.3 | NC_007605.1 | + | 111427 | 0.68 | 0.989608 |
Target: 5'- --cGGAUCACC-CCCUCUGggcCCAc-- -3' miRNA: 3'- gguUCUAGUGGuGGGAGAUa--GGUaua -5' |
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33596 | 5' | -49.3 | NC_007605.1 | + | 96659 | 0.69 | 0.988155 |
Target: 5'- gCCAGGcuGUCGCCAgCCUguUUGUCCAg-- -3' miRNA: 3'- -GGUUC--UAGUGGUgGGA--GAUAGGUaua -5' |
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33596 | 5' | -49.3 | NC_007605.1 | + | 65901 | 0.69 | 0.988155 |
Target: 5'- aCCAAGGUCACCaacaaggaggagGCCCUUaggCCAa-- -3' miRNA: 3'- -GGUUCUAGUGG------------UGGGAGauaGGUaua -5' |
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33596 | 5' | -49.3 | NC_007605.1 | + | 782 | 0.69 | 0.986548 |
Target: 5'- gCCGGGGgcgCgACCGCCuCUCUGUCCc--- -3' miRNA: 3'- -GGUUCUa--G-UGGUGG-GAGAUAGGuaua -5' |
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33596 | 5' | -49.3 | NC_007605.1 | + | 1304 | 0.69 | 0.986548 |
Target: 5'- gCCGGGGgcgCgACCGCCuCUCUGUCCc--- -3' miRNA: 3'- -GGUUCUa--G-UGGUGG-GAGAUAGGuaua -5' |
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33596 | 5' | -49.3 | NC_007605.1 | + | 1842 | 0.69 | 0.986548 |
Target: 5'- gCCGGGGgcgCgACCGCCuCUCUGUCCc--- -3' miRNA: 3'- -GGUUCUa--G-UGGUGG-GAGAUAGGuaua -5' |
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33596 | 5' | -49.3 | NC_007605.1 | + | 244 | 0.69 | 0.986548 |
Target: 5'- gCCGGGGgcgCgACCGCCuCUCUGUCCc--- -3' miRNA: 3'- -GGUUCUa--G-UGGUGG-GAGAUAGGuaua -5' |
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33596 | 5' | -49.3 | NC_007605.1 | + | 60448 | 0.69 | 0.984779 |
Target: 5'- gCCAgagGGAUCugCACCCUCccgGUCUc--- -3' miRNA: 3'- -GGU---UCUAGugGUGGGAGa--UAGGuaua -5' |
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33596 | 5' | -49.3 | NC_007605.1 | + | 125601 | 0.71 | 0.956225 |
Target: 5'- aCCAGGAUC-CC-CCC-CUGUCCGc-- -3' miRNA: 3'- -GGUUCUAGuGGuGGGaGAUAGGUaua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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