miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33596 5' -49.3 NC_007605.1 + 139691 1.08 0.014705
Target:  5'- aCCAAGAUCACCACCCUCUAUCCAUAUc -3'
miRNA:   3'- -GGUUCUAGUGGUGGGAGAUAGGUAUA- -5'
33596 5' -49.3 NC_007605.1 + 156463 0.78 0.68764
Target:  5'- aCCAGGAUCACCACCCcCg--CCAc-- -3'
miRNA:   3'- -GGUUCUAGUGGUGGGaGauaGGUaua -5'
33596 5' -49.3 NC_007605.1 + 72569 0.77 0.729421
Target:  5'- gCUAAGAcCACCGCCC-CUGUCCAc-- -3'
miRNA:   3'- -GGUUCUaGUGGUGGGaGAUAGGUaua -5'
33596 5' -49.3 NC_007605.1 + 87022 0.73 0.910005
Target:  5'- gUAGGGUUGCCauaACCCUCUGcUCCAUGa -3'
miRNA:   3'- gGUUCUAGUGG---UGGGAGAU-AGGUAUa -5'
33596 5' -49.3 NC_007605.1 + 136784 0.73 0.910005
Target:  5'- cCCGGGGgaggaCGCCACCCUCUA-CCGc-- -3'
miRNA:   3'- -GGUUCUa----GUGGUGGGAGAUaGGUaua -5'
33596 5' -49.3 NC_007605.1 + 14437 0.71 0.952117
Target:  5'- aCCAAGAUUaauccaACCACCgUCaUGUCCAg-- -3'
miRNA:   3'- -GGUUCUAG------UGGUGGgAG-AUAGGUaua -5'
33596 5' -49.3 NC_007605.1 + 125601 0.71 0.956225
Target:  5'- aCCAGGAUC-CC-CCC-CUGUCCGc-- -3'
miRNA:   3'- -GGUUCUAGuGGuGGGaGAUAGGUaua -5'
33596 5' -49.3 NC_007605.1 + 60448 0.69 0.984779
Target:  5'- gCCAgagGGAUCugCACCCUCccgGUCUc--- -3'
miRNA:   3'- -GGU---UCUAGugGUGGGAGa--UAGGuaua -5'
33596 5' -49.3 NC_007605.1 + 1304 0.69 0.986548
Target:  5'- gCCGGGGgcgCgACCGCCuCUCUGUCCc--- -3'
miRNA:   3'- -GGUUCUa--G-UGGUGG-GAGAUAGGuaua -5'
33596 5' -49.3 NC_007605.1 + 782 0.69 0.986548
Target:  5'- gCCGGGGgcgCgACCGCCuCUCUGUCCc--- -3'
miRNA:   3'- -GGUUCUa--G-UGGUGG-GAGAUAGGuaua -5'
33596 5' -49.3 NC_007605.1 + 244 0.69 0.986548
Target:  5'- gCCGGGGgcgCgACCGCCuCUCUGUCCc--- -3'
miRNA:   3'- -GGUUCUa--G-UGGUGG-GAGAUAGGuaua -5'
33596 5' -49.3 NC_007605.1 + 1842 0.69 0.986548
Target:  5'- gCCGGGGgcgCgACCGCCuCUCUGUCCc--- -3'
miRNA:   3'- -GGUUCUa--G-UGGUGG-GAGAUAGGuaua -5'
33596 5' -49.3 NC_007605.1 + 96659 0.69 0.988155
Target:  5'- gCCAGGcuGUCGCCAgCCUguUUGUCCAg-- -3'
miRNA:   3'- -GGUUC--UAGUGGUgGGA--GAUAGGUaua -5'
33596 5' -49.3 NC_007605.1 + 65901 0.69 0.988155
Target:  5'- aCCAAGGUCACCaacaaggaggagGCCCUUaggCCAa-- -3'
miRNA:   3'- -GGUUCUAGUGG------------UGGGAGauaGGUaua -5'
33596 5' -49.3 NC_007605.1 + 111427 0.68 0.989608
Target:  5'- --cGGAUCACC-CCCUCUGggcCCAc-- -3'
miRNA:   3'- gguUCUAGUGGuGGGAGAUa--GGUaua -5'
33596 5' -49.3 NC_007605.1 + 132436 0.68 0.993148
Target:  5'- gCCAuGGAUC-CCACCCgggGUCUGUGUg -3'
miRNA:   3'- -GGU-UCUAGuGGUGGGagaUAGGUAUA- -5'
33596 5' -49.3 NC_007605.1 + 31971 0.68 0.994085
Target:  5'- aCAAGAgCACaCACCCacUCUAUCUAa-- -3'
miRNA:   3'- gGUUCUaGUG-GUGGG--AGAUAGGUaua -5'
33596 5' -49.3 NC_007605.1 + 136070 0.68 0.994085
Target:  5'- gCCcGGAagACCACCCUCUGcCCc--- -3'
miRNA:   3'- -GGuUCUagUGGUGGGAGAUaGGuaua -5'
33596 5' -49.3 NC_007605.1 + 159970 0.67 0.996295
Target:  5'- uCCAGcgcucuGGUCGCC-CCCUCUGccUCCGg-- -3'
miRNA:   3'- -GGUU------CUAGUGGuGGGAGAU--AGGUaua -5'
33596 5' -49.3 NC_007605.1 + 16127 0.67 0.997351
Target:  5'- aCAAGAUCACC-CUCUCccAUCCc--- -3'
miRNA:   3'- gGUUCUAGUGGuGGGAGa-UAGGuaua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.