miRNA display CGI


Results 1 - 20 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33597 3' -51.2 NC_007605.1 + 40912 0.66 0.996426
Target:  5'- aCCUGgagcuGGAcGGAgauuuacaUGCAGGCAUugAAGa -3'
miRNA:   3'- gGGAU-----UCU-CCU--------GCGUCCGUAugUUCc -5'
33597 3' -51.2 NC_007605.1 + 9036 0.66 0.996426
Target:  5'- ---aAGGAGGACGaCGGGCAgcgGCcGGa -3'
miRNA:   3'- gggaUUCUCCUGC-GUCCGUa--UGuUCc -5'
33597 3' -51.2 NC_007605.1 + 78126 0.66 0.996426
Target:  5'- uCCCaAGGuGGGGCuGguGGCAUuuGGGGu -3'
miRNA:   3'- -GGGaUUC-UCCUG-CguCCGUAugUUCC- -5'
33597 3' -51.2 NC_007605.1 + 78063 0.66 0.996426
Target:  5'- uCCCaAGGuGGGGCuGguGGCAUuuGGGGu -3'
miRNA:   3'- -GGGaUUC-UCCUG-CguCCGUAugUUCC- -5'
33597 3' -51.2 NC_007605.1 + 78000 0.66 0.996426
Target:  5'- uCCCaAGGuGGGGCuGguGGCAUuuGGGGu -3'
miRNA:   3'- -GGGaUUC-UCCUG-CguCCGUAugUUCC- -5'
33597 3' -51.2 NC_007605.1 + 16723 0.66 0.996368
Target:  5'- uCUCUGGGcaaaauuAGGGCuGgGGGCGUcuGCGAGGu -3'
miRNA:   3'- -GGGAUUC-------UCCUG-CgUCCGUA--UGUUCC- -5'
33597 3' -51.2 NC_007605.1 + 40273 0.66 0.996251
Target:  5'- cCCCguucacggGGGAGGAcCGCggccgagccaccagGGGCccgGCGGGGg -3'
miRNA:   3'- -GGGa-------UUCUCCU-GCG--------------UCCGua-UGUUCC- -5'
33597 3' -51.2 NC_007605.1 + 16904 0.66 0.996251
Target:  5'- aCCUAcugggggccaagaaGGAGGAUGU--GCAuUACAAGGa -3'
miRNA:   3'- gGGAU--------------UCUCCUGCGucCGU-AUGUUCC- -5'
33597 3' -51.2 NC_007605.1 + 162120 0.66 0.995817
Target:  5'- uUCCUGGGuAGGACGUauuucccgcgGGGCAgUGCAu-- -3'
miRNA:   3'- -GGGAUUC-UCCUGCG----------UCCGU-AUGUucc -5'
33597 3' -51.2 NC_007605.1 + 15395 0.66 0.995685
Target:  5'- aCCCUcAGuGGccagcagagcauUGCAGGCAgcCAGGGa -3'
miRNA:   3'- -GGGAuUCuCCu-----------GCGUCCGUauGUUCC- -5'
33597 3' -51.2 NC_007605.1 + 60928 0.66 0.99555
Target:  5'- gCUcGAGAGGACgGCGGGCccgggucagcuCGGGGg -3'
miRNA:   3'- gGGaUUCUCCUG-CGUCCGuau--------GUUCC- -5'
33597 3' -51.2 NC_007605.1 + 8308 0.66 0.995125
Target:  5'- gCCUUAAuGAuuguGGACaGCGcGGCAUGCGAGc -3'
miRNA:   3'- -GGGAUU-CU----CCUG-CGU-CCGUAUGUUCc -5'
33597 3' -51.2 NC_007605.1 + 72368 0.66 0.995125
Target:  5'- cCUCUAAGuacAGGucGCGUAGGUcUAUggGGa -3'
miRNA:   3'- -GGGAUUC---UCC--UGCGUCCGuAUGuuCC- -5'
33597 3' -51.2 NC_007605.1 + 66347 0.66 0.995125
Target:  5'- uCCCauGGAaccGGCGCAGGU-UGCGGGGc -3'
miRNA:   3'- -GGGauUCUc--CUGCGUCCGuAUGUUCC- -5'
33597 3' -51.2 NC_007605.1 + 75946 0.66 0.995125
Target:  5'- aCCCUc--GGGugGgCGGGCAUA-GAGGc -3'
miRNA:   3'- -GGGAuucUCCugC-GUCCGUAUgUUCC- -5'
33597 3' -51.2 NC_007605.1 + 22862 0.66 0.995125
Target:  5'- gCCgaAAGcAGGaAUGCGGGgAgcgGCAAGGg -3'
miRNA:   3'- -GGgaUUC-UCC-UGCGUCCgUa--UGUUCC- -5'
33597 3' -51.2 NC_007605.1 + 86350 0.66 0.994344
Target:  5'- aCCUGAgGAGGugGCgugggaguGGGCGcccccCGAGGc -3'
miRNA:   3'- gGGAUU-CUCCugCG--------UCCGUau---GUUCC- -5'
33597 3' -51.2 NC_007605.1 + 86410 0.66 0.994344
Target:  5'- aCCUGAgGAGGugGCgugggaguGGGCGcccccCGAGGc -3'
miRNA:   3'- gGGAUU-CUCCugCG--------UCCGUau---GUUCC- -5'
33597 3' -51.2 NC_007605.1 + 165035 0.66 0.994344
Target:  5'- gCCCagGAGAGGA-GCAGGUgcuUAUuGGGc -3'
miRNA:   3'- -GGGa-UUCUCCUgCGUCCGu--AUGuUCC- -5'
33597 3' -51.2 NC_007605.1 + 112832 0.66 0.994344
Target:  5'- gUCCUGAG-GGGCGguGggcGCGUGCAc-- -3'
miRNA:   3'- -GGGAUUCuCCUGCguC---CGUAUGUucc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.