miRNA display CGI


Results 21 - 40 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33597 3' -51.2 NC_007605.1 + 86350 0.66 0.994344
Target:  5'- aCCUGAgGAGGugGCgugggaguGGGCGcccccCGAGGc -3'
miRNA:   3'- gGGAUU-CUCCugCG--------UCCGUau---GUUCC- -5'
33597 3' -51.2 NC_007605.1 + 54528 0.66 0.993464
Target:  5'- gCCgcGGGGGugGCGGGC---CAAGc -3'
miRNA:   3'- gGGauUCUCCugCGUCCGuauGUUCc -5'
33597 3' -51.2 NC_007605.1 + 91385 0.66 0.993464
Target:  5'- gUCCUGuGGGGGugGgagccaaagAGGCAgGCAGGGg -3'
miRNA:   3'- -GGGAU-UCUCCugCg--------UCCGUaUGUUCC- -5'
33597 3' -51.2 NC_007605.1 + 61612 0.66 0.993464
Target:  5'- uCUCUAGGAGGgcgGCGguGGCcu-CGAGc -3'
miRNA:   3'- -GGGAUUCUCC---UGCguCCGuauGUUCc -5'
33597 3' -51.2 NC_007605.1 + 136534 0.66 0.992478
Target:  5'- uCCCcAGGAGGuuacuACGcCGGGCccgcggGCGGGGa -3'
miRNA:   3'- -GGGaUUCUCC-----UGC-GUCCGua----UGUUCC- -5'
33597 3' -51.2 NC_007605.1 + 136783 0.66 0.99216
Target:  5'- uCCCggGGGAGGACGCcacccucuaccgcaAGGaCAUAgcGGGc -3'
miRNA:   3'- -GGGa-UUCUCCUGCG--------------UCC-GUAUguUCC- -5'
33597 3' -51.2 NC_007605.1 + 110832 0.67 0.991377
Target:  5'- gCC---GGGGACGCAGGagc-CGAGGg -3'
miRNA:   3'- gGGauuCUCCUGCGUCCguauGUUCC- -5'
33597 3' -51.2 NC_007605.1 + 15632 0.67 0.991377
Target:  5'- gCCgcAGGGGugGUGGaUGUGCGGGGg -3'
miRNA:   3'- gGGauUCUCCugCGUCcGUAUGUUCC- -5'
33597 3' -51.2 NC_007605.1 + 83513 0.67 0.991377
Target:  5'- aCC-GAGAGGGCGCagacugaugGGGCccaugauggGCGAGGc -3'
miRNA:   3'- gGGaUUCUCCUGCG---------UCCGua-------UGUUCC- -5'
33597 3' -51.2 NC_007605.1 + 90236 0.67 0.991261
Target:  5'- cCCCUGgagauacAGGGGGCaaGGGCGUAgguGGGg -3'
miRNA:   3'- -GGGAU-------UCUCCUGcgUCCGUAUgu-UCC- -5'
33597 3' -51.2 NC_007605.1 + 75765 0.67 0.990153
Target:  5'- aUCUGGGGGGugGCAuaucugaaGGCAgcCAGGu -3'
miRNA:   3'- gGGAUUCUCCugCGU--------CCGUauGUUCc -5'
33597 3' -51.2 NC_007605.1 + 103645 0.67 0.990153
Target:  5'- gCCUGucgcuGGcCGgGGGCAUAUAGGGc -3'
miRNA:   3'- gGGAUucu--CCuGCgUCCGUAUGUUCC- -5'
33597 3' -51.2 NC_007605.1 + 136751 0.67 0.990153
Target:  5'- cCCCgAGGAGGAUGaagaAGGCG---GGGGg -3'
miRNA:   3'- -GGGaUUCUCCUGCg---UCCGUaugUUCC- -5'
33597 3' -51.2 NC_007605.1 + 171582 0.67 0.988508
Target:  5'- cCCCggggggcaucggGGGGGGuguugGCGgGGGCAUGgGGGGg -3'
miRNA:   3'- -GGGa-----------UUCUCC-----UGCgUCCGUAUgUUCC- -5'
33597 3' -51.2 NC_007605.1 + 118192 0.67 0.987299
Target:  5'- uCCCUuuGGAGGACaGCGuGGgGgcCAAGGu -3'
miRNA:   3'- -GGGAu-UCUCCUG-CGU-CCgUauGUUCC- -5'
33597 3' -51.2 NC_007605.1 + 109429 0.67 0.987299
Target:  5'- cCCCUGGGcGGcUGCAGG---GCAGGGu -3'
miRNA:   3'- -GGGAUUCuCCuGCGUCCguaUGUUCC- -5'
33597 3' -51.2 NC_007605.1 + 9565 0.67 0.987299
Target:  5'- aCCUGccAGAccuGGACGC-GGCccUGCAGGGc -3'
miRNA:   3'- gGGAU--UCU---CCUGCGuCCGu-AUGUUCC- -5'
33597 3' -51.2 NC_007605.1 + 50844 0.67 0.987299
Target:  5'- cCCCUGGcuuccacucacGGGACGCAGaauGUGCAGGGa -3'
miRNA:   3'- -GGGAUUc----------UCCUGCGUCcg-UAUGUUCC- -5'
33597 3' -51.2 NC_007605.1 + 61447 0.67 0.987299
Target:  5'- ---cGGGGGcGGCgGCGGGCGUAgAGGGg -3'
miRNA:   3'- gggaUUCUC-CUG-CGUCCGUAUgUUCC- -5'
33597 3' -51.2 NC_007605.1 + 102705 0.67 0.987299
Target:  5'- gUCC--AGAGGACGgccauUAGGCAUGCcgucGGGa -3'
miRNA:   3'- -GGGauUCUCCUGC-----GUCCGUAUGu---UCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.