miRNA display CGI


Results 1 - 20 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33597 3' -51.2 NC_007605.1 + 7363 0.8 0.480199
Target:  5'- cCCUUGGGAGGugGC-GGCAUAUgcaAAGGa -3'
miRNA:   3'- -GGGAUUCUCCugCGuCCGUAUG---UUCC- -5'
33597 3' -51.2 NC_007605.1 + 7940 0.71 0.910039
Target:  5'- gCCUAccuGGGGGCGguGGCAauaacCGAGGc -3'
miRNA:   3'- gGGAUu--CUCCUGCguCCGUau---GUUCC- -5'
33597 3' -51.2 NC_007605.1 + 8308 0.66 0.995125
Target:  5'- gCCUUAAuGAuuguGGACaGCGcGGCAUGCGAGc -3'
miRNA:   3'- -GGGAUU-CU----CCUG-CGU-CCGUAUGUUCc -5'
33597 3' -51.2 NC_007605.1 + 9036 0.66 0.996426
Target:  5'- ---aAGGAGGACGaCGGGCAgcgGCcGGa -3'
miRNA:   3'- gggaUUCUCCUGC-GUCCGUa--UGuUCc -5'
33597 3' -51.2 NC_007605.1 + 9565 0.67 0.987299
Target:  5'- aCCUGccAGAccuGGACGC-GGCccUGCAGGGc -3'
miRNA:   3'- gGGAU--UCU---CCUGCGuCCGu-AUGUUCC- -5'
33597 3' -51.2 NC_007605.1 + 11617 0.69 0.968909
Target:  5'- gCCCagAGGAGGGCGCggucccgggcccgGGGCGgccggagGCAgaGGGg -3'
miRNA:   3'- -GGGa-UUCUCCUGCG-------------UCCGUa------UGU--UCC- -5'
33597 3' -51.2 NC_007605.1 + 11856 0.74 0.792916
Target:  5'- gCCUGcGAGGagGCGCuGGCGgggGCAAGGc -3'
miRNA:   3'- gGGAUuCUCC--UGCGuCCGUa--UGUUCC- -5'
33597 3' -51.2 NC_007605.1 + 12293 0.68 0.977392
Target:  5'- gUCUGGGGGGACGU-GGUcUACuGGGa -3'
miRNA:   3'- gGGAUUCUCCUGCGuCCGuAUGuUCC- -5'
33597 3' -51.2 NC_007605.1 + 12370 0.81 0.470612
Target:  5'- uCCCUGGGAGGACagGCGcGCcgGCGAGGg -3'
miRNA:   3'- -GGGAUUCUCCUG--CGUcCGuaUGUUCC- -5'
33597 3' -51.2 NC_007605.1 + 14222 0.69 0.972144
Target:  5'- uUCUGAGGcgucGGAgGCGGG-AUGCGGGGa -3'
miRNA:   3'- gGGAUUCU----CCUgCGUCCgUAUGUUCC- -5'
33597 3' -51.2 NC_007605.1 + 15395 0.66 0.995685
Target:  5'- aCCCUcAGuGGccagcagagcauUGCAGGCAgcCAGGGa -3'
miRNA:   3'- -GGGAuUCuCCu-----------GCGUCCGUauGUUCC- -5'
33597 3' -51.2 NC_007605.1 + 15632 0.67 0.991377
Target:  5'- gCCgcAGGGGugGUGGaUGUGCGGGGg -3'
miRNA:   3'- gGGauUCUCCugCGUCcGUAUGUUCC- -5'
33597 3' -51.2 NC_007605.1 + 15689 0.69 0.969214
Target:  5'- uCCCUGacGGuGGugGgGGGUG-ACGAGGa -3'
miRNA:   3'- -GGGAU--UCuCCugCgUCCGUaUGUUCC- -5'
33597 3' -51.2 NC_007605.1 + 16723 0.66 0.996368
Target:  5'- uCUCUGGGcaaaauuAGGGCuGgGGGCGUcuGCGAGGu -3'
miRNA:   3'- -GGGAUUC-------UCCUG-CgUCCGUA--UGUUCC- -5'
33597 3' -51.2 NC_007605.1 + 16904 0.66 0.996251
Target:  5'- aCCUAcugggggccaagaaGGAGGAUGU--GCAuUACAAGGa -3'
miRNA:   3'- gGGAU--------------UCUCCUGCGucCGU-AUGUUCC- -5'
33597 3' -51.2 NC_007605.1 + 16966 0.73 0.853393
Target:  5'- gCCCcGAG-GGGCGCAGGCGgcucgGCAuguacugcgugcAGGa -3'
miRNA:   3'- -GGGaUUCuCCUGCGUCCGUa----UGU------------UCC- -5'
33597 3' -51.2 NC_007605.1 + 22304 0.7 0.946955
Target:  5'- aCCCUAAGAGccacuGGCGCuGGg--ACGGGGa -3'
miRNA:   3'- -GGGAUUCUC-----CUGCGuCCguaUGUUCC- -5'
33597 3' -51.2 NC_007605.1 + 22862 0.66 0.995125
Target:  5'- gCCgaAAGcAGGaAUGCGGGgAgcgGCAAGGg -3'
miRNA:   3'- -GGgaUUC-UCC-UGCGUCCgUa--UGUUCC- -5'
33597 3' -51.2 NC_007605.1 + 22906 0.68 0.983846
Target:  5'- gCCUGGGAGGGgGCGaGCAgucGCAuggcGGGa -3'
miRNA:   3'- gGGAUUCUCCUgCGUcCGUa--UGU----UCC- -5'
33597 3' -51.2 NC_007605.1 + 31815 0.89 0.167124
Target:  5'- cCCaCUAAGGGGACacCAGGCAUACAAGGa -3'
miRNA:   3'- -GG-GAUUCUCCUGc-GUCCGUAUGUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.